VIGGS:GBrowse

Vigan.08G143300.01

Basic Information:

Name:	Vigan.08G143300.01 Multiple alignment Variant Information
Position:	Chr08:12678232..12690377 (+ strand)
Length:	12146

Functional Information:

Description:	Similar to Uncharacterized protein. [I1K7T2, Glycine max]
GO:	Biological Process: actin filament depolymerization (GO:0030042)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: actin cytoskeleton (GO:0015629)
	Molecular Function: actin binding (GO:0003779)
InterPro:	Actin-binding, cofilin/tropomyosin type (IPR002108)
InterPro:	ADF/Cofilin/Destrin (IPR017904)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:63.64,47.52,35.63,54.14,55.71,67.92,56.42,34.04

Automatic updates:

Name:	NM_001248129 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305927 (LOC100305927), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249171 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500047 (LOC100500047), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:12678232..12678435 (+ strand)
Length:	204
Type:	five_prime_UTR

Position:	Chr08:12678436..12678462 (+ strand)
Length:	27
Type:	CDS

Position:	Chr08:12679379..12679644 (+ strand)
Length:	266
Type:	CDS

Position:	Chr08:12689771..12689921 (+ strand)
Length:	151
Type:	CDS

Position:	Chr08:12689922..12690377 (+ strand)
Length:	456
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G143300.01
TTTGCAACTT TGTAAAAGTA TTTGCGTTTC TCTTTTGTGG AGGTTTTCCC TTTGCTTTGG TTTTACTTTA CCTTTCTTAA
GTGAAGAGAA TAAATACCTT TTTTTGCGTT CGATAATTTT CTTCACTATT TTTCTCTCCT CTCCACACAA TTTCTCTTAC
CTTTCTCTCG CTGCGCAAAA CACATCTTTT ATCTCACTGT ACCCATGGCT TTCAGAGTAG GAGGGGGAGG GGGAAATGCC
TCTTCTGGAA TGGGTGTTGC TGAGCATAGC GTTAACACGT TCCTGGAATT ACAGAGGAAG AAAGTTCATC GCTATGTGGT
TTTTAAAATT GACGAGATAA AGCAAGAGGT TGTGGTAGAG AAAACCGGAG GCCCTGCTGA GAGCTACGAT GATTTCACTG
CATCCTTGCC TGAAAGTGAT TGCCGATATG CTGTTTATGA CTTTGATTTT GTGACATCTG AGAACTGCCA GAAGAGCAAA
ATCTTTTTCG TGGCATGGTC TCCTTCAGTA TCCCGCATTC GCTCTAAGAT GCTTTATGCA ACATCCAAGG ACAGGTTCAG
AAGGGAACTA CAGGGCATCC ATTACGAGAT TCAGGCAACA GACCCAACAG AGATGGATCT TGAAGTCCTC AGAGAGCGTG
CAAACTGAGC AGCTACGCAA GAGAGTCGTG TTTTTAGGTG ACTAGTTAGG ATATGAGACC CTGCGGGACT GATGTTGACT
GATACCCTTT AGTTCTACCA TGTTATTGGT CTGTTTCGAT ATATTTTTTT CTTAAACTGC TGACTTATCA TTTATCAAGT
GAATAACCTG CACCTGTGAA AGCTGATTAG GGGTTCCTGC CTAAGAAACT CCACTGCAGG GGAATTTCAG CATTTCCTAA
TTGCCATGAT GCTTCACAGG GGCAGATTAA TATATTAATG GCTATTGAAA AATCAACTTA TATTCTATGA ATTTCTAGTG
GAAGTTGGTG AATCTACTTT GTTCCTTTTT AATCCACGCA GGGGTTTAGT TTTGTTGCTT CAGTTCCAGG ACTGGAACAT
TTGCCAATTG CTTTCTGAAC TTAAGGTATG AAAACTACTC AATAAGCTTA CTGATTTGAT CGAG

[show][hide][copy]CDS

>Vigan.08G143300.01
ATGGCTTTCA GAGTAGGAGG GGGAGGGGGA AATGCCTCTT CTGGAATGGG TGTTGCTGAG CATAGCGTTA ACACGTTCCT
GGAATTACAG AGGAAGAAAG TTCATCGCTA TGTGGTTTTT AAAATTGACG AGATAAAGCA AGAGGTTGTG GTAGAGAAAA
CCGGAGGCCC TGCTGAGAGC TACGATGATT TCACTGCATC CTTGCCTGAA AGTGATTGCC GATATGCTGT TTATGACTTT
GATTTTGTGA CATCTGAGAA CTGCCAGAAG AGCAAAATCT TTTTCGTGGC ATGGTCTCCT TCAGTATCCC GCATTCGCTC
TAAGATGCTT TATGCAACAT CCAAGGACAG GTTCAGAAGG GAACTACAGG GCATCCATTA CGAGATTCAG GCAACAGACC
CAACAGAGAT GGATCTTGAA GTCCTCAGAG AGCGTGCAAA CTGA

[show][hide][copy]PROTEIN

>Vigan.08G143300.01
MAFRVGGGGG NASSGMGVAE HSVNTFLELQ RKKVHRYVVF KIDEIKQEVV VEKTGGPAES YDDFTASLPE SDCRYAVYDF
DFVTSENCQK SKIFFVAWSP SVSRIRSKML YATSKDRFRR ELQGIHYEIQ ATDPTEMDLE VLRERAN*