GBrowse Details

Vigan.08G143400.01

Basic Information:
Name: Vigan.08G143400.01
Multiple alignment
Variant Information
Position: Chr08:12694904..12699638 (+ strand)
Length: 4735
Functional Information:
Description: Similar to cryptochrome 2 isoform X2. [XP_006588364.1, Glycine max]
GO: Biological Process: DNA repair (GO:0006281)
Molecular Function: DNA photolyase activity (GO:0003913)
InterPro: Cryptochrome/DNA photolyase, class 1 (IPR002081)
DNA photolyase, FAD-binding/Cryptochrome, C-terminal (IPR005101)
DNA photolyase, N-terminal (IPR006050)
Cryptochrome, plant (IPR014134)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (IPR018394)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:779.57,249.59,40.17,107.75,18.28,46.60,21.48,53.59
Arabidopsis thaliana homolog: AT1G04400.2, AT4G08920.1
Automatic updates:
Name: NM_001248291 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cryptochrome 2 (LOC100233234), mRNA.
PubMed ID: 24272488 NCBI(pubmed)
19106300 NCBI(pubmed)
Status: Known Variant
Name: NM_001289325 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cryptochrome-2-like (LOC100808627), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:12694904..12695512 (+ strand)
Length: 609
Type: five_prime_UTR
Position: Chr08:12695513..12695822 (+ strand)
Length: 310
Type: CDS
Position: Chr08:12696515..12696736 (+ strand)
Length: 222
Type: CDS
Position: Chr08:12696965..12697671 (+ strand)
Length: 707
Type: CDS
Position: Chr08:12698761..12699504 (+ strand)
Length: 744
Type: CDS
Position: Chr08:12699505..12699638 (+ strand)
Length: 134
Type: three_prime_UTR


>Vigan.08G143400.01
AGGTGTGTTT GTGGATGAAT TTGAAGAACT TTCCAGTTAT TCATCTCTAT ATTGAAGATT ATTTTCTGAT ATGATATTTT
GAATATTCCA ACTCAGTGCT TTGTGGATTT TTATGCTTTT GCAACCTTTA TTATTCTTCA GTCACTTTTG TTTCTCGATC
GGAAATTTTC TTCTTTTCCT TTTGTTATTT TTAACTGGTG GTGGTCTTTA AATTGGTGAG TGAGACATGT GGGGGATGGG
TTCTCTGAGT AGGATTTAGG TTGGATACCT AACACAAAGC AAAGTGGCAT CCAAGTTGGA CATCCTGATA AGCTACTTGT
TTCTTGGTCC ACTTTGGCTG TGATTTTGAG GTTCTCATCT CATGCTGCTA ACAGATATCT TTATGTTTTT TGCAAAAATC
AAGATCCAAC CTTTGTATCT GATATCTTGT CTTGTATTAA ATTTTCACAT ATCTTCTTTT GCCAGGGATC TTGATTAGGA
GAACCGTGAA GTGTTGAGGC GAACTTCGTA ATTCTTTAAT CGGGTACAAG TAACTTGTGG AGAAGTTACT CTGACATGGT
ATGAGGTTGA AAGTTTTGGC TGTGCCATGA AAAATTGGAA GTGTACAATA TGGTTAGCAA CAGGACTATT GTTTGGTTTA
GAAGGGACCT TAGAATTGAG GACAATCCTG CATTAGCTGC TGCTGCCAGG GAGGGTTCTG TACTTCCTGT TTATATATGG
TGCCCTAAAG AGGAGGGACA ATTTTATCCA GGAAGAGTGT CAAGGTGGTG GCTGAAGCAA TCTCTTGCTC AACTGGATCG
GTCACTGAAG TCTCTTGGGA CCAGGCTTGT GTTCATCAAA ACCCATAGTA TTGTCACAGC TCTTTTGGAC TGCATAAAGG
CCATTCAAGC AACAAAAGTA GTGTTTAACC ATCTATATGA TCCAGTTTCA CTTGTCCGTG ACCACAACAT CAAAGAAAAA
CTAGTGGAAC AAGGCATCTC TGTGCAAAGC TACAATGGGG ATCTGTTGTA TGAGCCATGG GAAATATATA CTGAGAGTGG
ACGTGCTTTC ACTACCTTCG ATGCTTTTTG GAAGAAATGC TTGCACAAGC AAATGGATGT TGTTTCAGTT GTTCCTCCGT
GGCAATTAAC TCCAGCTGAA GGAAAAGTTG AGTGTTGTTC AGTGGAGGAA CTGGATCTTG AAAATGAATT AGAAAAGCCA
AGCAACGCGT TACTGGGACG GGCATGGTCA CCGGGTTGGA GAAATGCTGA CAAGGCCTTA ACAGAATTTG TGGAGCAGCA
TCTACTTCAC TACTCCAAGA AAAGGCTGAA GGTTGGTGGA GACTCAACGT CACTCTTGTC CCCATATCTT CACTTTGGAG
AATTGAGCGT GAGGAAAGTT TTTCAAGTGA CACGTATGAA GCAAATATTA TGGACAAATG AAGGCAACAG TGTTGGTGAA
GAGAGTGTAA ATCTTTTTCT GAGGGCCATT GGACTTAGAG AGTACTCACG TTATCTTTGT TTCAACTTTC CCTTCACTCA
CGAGAGAGCA CTTCTGGGGC ACTTAAAGTT TTTTCCTTGG GATCCTGATC CTGATAACTT TAAGACTTGG AGACAAGGGA
GGACTGGTTA TCCTTTGGTT GATGCAGGAA TGAGAGAACT TTGGGCAACA GGATGGATAC ACAACAGAAT AAGAGTAATA
GTTTCAAGTT TTGCTGTCAA AATGTTGCTT CTACCTTGGA AATGGGGGAT GAAGTATTTC TGGGACACAC TTTTGGATGC
AGACCTTGAA AGTGATATCT TGGGTTGGCA GTATATCTCA GGTGGCTTAC CAGATGGTCA TGAGCTTGAG CGCTTGGACA
ATCCTGAGAT TCTAGGTGCC AAGTTTGATC CAGAAGGTGA GTATGTGAGG CAATGGCTAC CTGAGTTGGC AAGAATGCCA
ACTGAGTGGA TCCATCACCC CTGGGATGCA CCACTTACTG TGCTTAGAGC ATCAGGAGTT GAGTTGGGTC AAAATTACCC
AAAGCCAATG ATTGATGTAG ATTTGGCCAG AGAAAGACTC ACTGAAGCTA TATTTAAGAT GTGGGAATCT GAGGCAGCAG
CAAAAGCTGC TGGTACTGAA CCAAGGGATG AAGTTGTTGT AGACAACACT AACAGTGTTG AAAACTTGGA CACTCCAAAA
CTTGTCTTTC TGGAAAAGGC TCCGTGTGCT ACTGTTTCTG CTAATGATCA GAAGGTACCA GCACTACCGG ATTCCAAGAT
AGACCACCCT CCTACTCGTA AGAGGCCAAA TTGTATGGTA GAGGAGGGGC AGAACCAGGA TAACTCTCAA AATCATAACA
AAGATATTGG AATGTCAAGC ATTGATCAAG ACATTTGCTC CACAGCTGAT TCTTCATCAT GCAAGAAGCA GTGTGCCAGT
ACAAGCTCAT ATTCATTTTC AGTTCCACAA CAGTGTTCCT CATCTTCAAA TCTAAAGTGG CCATGGCAAG AACAGATTGA
CATGGAGCAG AGTTCTAGCA AAGATGGTAA GTATATTCTT ACATTTCCAA CGGAGAAAAG ATATGAAAAT ACAGTCTCAA
ACGAGAGACA TTTACAAAAA TTATTTGAAT AAACCGATTT ACAATGATGT TATCTTTTAT AACTATTATG ATTATTTGAG
ACTCAATTCT TTGCAACTTT ATTGGCTTTT TGCGGGCTAC TAATAAATAA GAGTTTCAAT GCAGGAGCTA TGTGAAATCG
ATGTTG

>Vigan.08G143400.01
ATGGTTAGCA ACAGGACTAT TGTTTGGTTT AGAAGGGACC TTAGAATTGA GGACAATCCT GCATTAGCTG CTGCTGCCAG
GGAGGGTTCT GTACTTCCTG TTTATATATG GTGCCCTAAA GAGGAGGGAC AATTTTATCC AGGAAGAGTG TCAAGGTGGT
GGCTGAAGCA ATCTCTTGCT CAACTGGATC GGTCACTGAA GTCTCTTGGG ACCAGGCTTG TGTTCATCAA AACCCATAGT
ATTGTCACAG CTCTTTTGGA CTGCATAAAG GCCATTCAAG CAACAAAAGT AGTGTTTAAC CATCTATATG ATCCAGTTTC
ACTTGTCCGT GACCACAACA TCAAAGAAAA ACTAGTGGAA CAAGGCATCT CTGTGCAAAG CTACAATGGG GATCTGTTGT
ATGAGCCATG GGAAATATAT ACTGAGAGTG GACGTGCTTT CACTACCTTC GATGCTTTTT GGAAGAAATG CTTGCACAAG
CAAATGGATG TTGTTTCAGT TGTTCCTCCG TGGCAATTAA CTCCAGCTGA AGGAAAAGTT GAGTGTTGTT CAGTGGAGGA
ACTGGATCTT GAAAATGAAT TAGAAAAGCC AAGCAACGCG TTACTGGGAC GGGCATGGTC ACCGGGTTGG AGAAATGCTG
ACAAGGCCTT AACAGAATTT GTGGAGCAGC ATCTACTTCA CTACTCCAAG AAAAGGCTGA AGGTTGGTGG AGACTCAACG
TCACTCTTGT CCCCATATCT TCACTTTGGA GAATTGAGCG TGAGGAAAGT TTTTCAAGTG ACACGTATGA AGCAAATATT
ATGGACAAAT GAAGGCAACA GTGTTGGTGA AGAGAGTGTA AATCTTTTTC TGAGGGCCAT TGGACTTAGA GAGTACTCAC
GTTATCTTTG TTTCAACTTT CCCTTCACTC ACGAGAGAGC ACTTCTGGGG CACTTAAAGT TTTTTCCTTG GGATCCTGAT
CCTGATAACT TTAAGACTTG GAGACAAGGG AGGACTGGTT ATCCTTTGGT TGATGCAGGA ATGAGAGAAC TTTGGGCAAC
AGGATGGATA CACAACAGAA TAAGAGTAAT AGTTTCAAGT TTTGCTGTCA AAATGTTGCT TCTACCTTGG AAATGGGGGA
TGAAGTATTT CTGGGACACA CTTTTGGATG CAGACCTTGA AAGTGATATC TTGGGTTGGC AGTATATCTC AGGTGGCTTA
CCAGATGGTC ATGAGCTTGA GCGCTTGGAC AATCCTGAGA TTCTAGGTGC CAAGTTTGAT CCAGAAGGTG AGTATGTGAG
GCAATGGCTA CCTGAGTTGG CAAGAATGCC AACTGAGTGG ATCCATCACC CCTGGGATGC ACCACTTACT GTGCTTAGAG
CATCAGGAGT TGAGTTGGGT CAAAATTACC CAAAGCCAAT GATTGATGTA GATTTGGCCA GAGAAAGACT CACTGAAGCT
ATATTTAAGA TGTGGGAATC TGAGGCAGCA GCAAAAGCTG CTGGTACTGA ACCAAGGGAT GAAGTTGTTG TAGACAACAC
TAACAGTGTT GAAAACTTGG ACACTCCAAA ACTTGTCTTT CTGGAAAAGG CTCCGTGTGC TACTGTTTCT GCTAATGATC
AGAAGGTACC AGCACTACCG GATTCCAAGA TAGACCACCC TCCTACTCGT AAGAGGCCAA ATTGTATGGT AGAGGAGGGG
CAGAACCAGG ATAACTCTCA AAATCATAAC AAAGATATTG GAATGTCAAG CATTGATCAA GACATTTGCT CCACAGCTGA
TTCTTCATCA TGCAAGAAGC AGTGTGCCAG TACAAGCTCA TATTCATTTT CAGTTCCACA ACAGTGTTCC TCATCTTCAA
ATCTAAAGTG GCCATGGCAA GAACAGATTG ACATGGAGCA GAGTTCTAGC AAAGATGGTA AGTATATTCT TACATTTCCA
ACGGAGAAAA GATATGAAAA TACAGTCTCA AACGAGAGAC ATTTACAAAA ATTATTTGAA TAA

>Vigan.08G143400.01
MVSNRTIVWF RRDLRIEDNP ALAAAAREGS VLPVYIWCPK EEGQFYPGRV SRWWLKQSLA QLDRSLKSLG TRLVFIKTHS
IVTALLDCIK AIQATKVVFN HLYDPVSLVR DHNIKEKLVE QGISVQSYNG DLLYEPWEIY TESGRAFTTF DAFWKKCLHK
QMDVVSVVPP WQLTPAEGKV ECCSVEELDL ENELEKPSNA LLGRAWSPGW RNADKALTEF VEQHLLHYSK KRLKVGGDST
SLLSPYLHFG ELSVRKVFQV TRMKQILWTN EGNSVGEESV NLFLRAIGLR EYSRYLCFNF PFTHERALLG HLKFFPWDPD
PDNFKTWRQG RTGYPLVDAG MRELWATGWI HNRIRVIVSS FAVKMLLLPW KWGMKYFWDT LLDADLESDI LGWQYISGGL
PDGHELERLD NPEILGAKFD PEGEYVRQWL PELARMPTEW IHHPWDAPLT VLRASGVELG QNYPKPMIDV DLARERLTEA
IFKMWESEAA AKAAGTEPRD EVVVDNTNSV ENLDTPKLVF LEKAPCATVS ANDQKVPALP DSKIDHPPTR KRPNCMVEEG
QNQDNSQNHN KDIGMSSIDQ DICSTADSSS CKKQCASTSS YSFSVPQQCS SSSNLKWPWQ EQIDMEQSSS KDGKYILTFP
TEKRYENTVS NERHLQKLFE *