VIGGS:GBrowse

Vigan.08G145900.01

Basic Information:

Name:	Vigan.08G145900.01 Multiple alignment Variant Information
Position:	Chr08:12977076..12981362 (- strand)
Length:	4287

Functional Information:

Description:	Similar to uncharacterized protein. [C6T5T8, Glycine max]
GO:	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, SAR1-type (IPR006687)
	Small GTPase superfamily, ARF/SAR type (IPR006689)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:27.74,16.40,26.91,20.49,30.97,33.08,35.36,24.40
Arabidopsis thaliana homolog:	AT3G22950.1

Automatic updates:

Name:	NM_001248024 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100526848 (LOC100526848), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001248561 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527908 (LOC100527908), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:12977076..12977296 (- strand)
Length:	221
Type:	three_prime_UTR

Position:	Chr08:12977297..12977656 (- strand)
Length:	360
Type:	CDS

Position:	Chr08:12980883..12981074 (- strand)
Length:	192
Type:	CDS

Position:	Chr08:12981075..12981362 (- strand)
Length:	288
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G145900.01
TGAAAAGTAA AAAAAGAAAA AATACAAAAC AAAATTGAAA ATTCCAAGTT GGGGCTCTCA CGATTTCAAT TTCCCTTTCT
TCCACGGACT CCGATTCTCC TTGTAAACAG GAGTGCCAGG TTCGATCTTT TCGTTCTATG ATGGTTAATG TATTTTGCAC
GTGATATCGA TCTGTTAACT GTATAATTGA CCCAACGCAA GTTTGATCGA AAATCTGATT TTCAGATACT TCGTGTTCCC
GGGTTTGTCT GTTGATTGTA TAGGATTTCT TTAAGAAGTA CATAGAGGAT GGGGGCATTG ATGTCGAGGT TCTGGTTCAT
GTTATTCCCT GCAAAAGAGT ATAAGATTGT TGTTGTTGGA TTAGATAACG CTGGAAAAAC CACCACCCTT TACAAATTGC
ATCTGGGTGA GGTTGTAACT ACCAATCCTA CTGTTGGTAG CAACGTCGAA GAGCTCGTTT ACAAGAATAT ACGATTTGAG
GTCTGGGATC TTGGTGGACA AGAAAGACTG AGGACATCAT GGGCAACATA TTACCGAGGA ACTCATGCTG TTATTGCGGT
GATAGACAGC AGTGATAGAG CCAGGATCTC TGTCATGAAG GATGAACTTT TTAGGTTGCT GGGGCACGAA GATTTGCAAC
ATTCTGTCGT TCTTGTCTTT GCTAATAAAC AAGATATCAA GGATGCTATG ACTCCTGCTG AGATCACTGA TGCATTATCT
CTTCACAGTA TCAAGGATCA TGATTGGCAT ATACAGGCTT GTTGTGCCCT CACTGGAGAA GGGCTCTATG ATGGTCTTGG
ATGGATTGCC CAGCGAGTAA CTGGCAAAGC CCCAACATGA TGTAGGGCTG CGGGAATCCT GAGATATTCA TTTTTCATGT
ATTGAATTTA TATGACGAGG GACAAAACTC TTATGTATCA TTTATACTTC AAAGAGTCAA ACAAAGATAA TGTGTTTGAT
TTGCTATGAT ATGAAGAGAA AGGTTATTCA ATAATCTGAT TAAGACACGT TAATTCTCAA TCAAGTTTAT TATTCAGGTG
AGAGGAATAC ATGAAAGGAG T

[show][hide][copy]CDS

>Vigan.08G145900.01
ATGGGGGCAT TGATGTCGAG GTTCTGGTTC ATGTTATTCC CTGCAAAAGA GTATAAGATT GTTGTTGTTG GATTAGATAA
CGCTGGAAAA ACCACCACCC TTTACAAATT GCATCTGGGT GAGGTTGTAA CTACCAATCC TACTGTTGGT AGCAACGTCG
AAGAGCTCGT TTACAAGAAT ATACGATTTG AGGTCTGGGA TCTTGGTGGA CAAGAAAGAC TGAGGACATC ATGGGCAACA
TATTACCGAG GAACTCATGC TGTTATTGCG GTGATAGACA GCAGTGATAG AGCCAGGATC TCTGTCATGA AGGATGAACT
TTTTAGGTTG CTGGGGCACG AAGATTTGCA ACATTCTGTC GTTCTTGTCT TTGCTAATAA ACAAGATATC AAGGATGCTA
TGACTCCTGC TGAGATCACT GATGCATTAT CTCTTCACAG TATCAAGGAT CATGATTGGC ATATACAGGC TTGTTGTGCC
CTCACTGGAG AAGGGCTCTA TGATGGTCTT GGATGGATTG CCCAGCGAGT AACTGGCAAA GCCCCAACAT GA

[show][hide][copy]PROTEIN

>Vigan.08G145900.01
MGALMSRFWF MLFPAKEYKI VVVGLDNAGK TTTLYKLHLG EVVTTNPTVG SNVEELVYKN IRFEVWDLGG QERLRTSWAT
YYRGTHAVIA VIDSSDRARI SVMKDELFRL LGHEDLQHSV VLVFANKQDI KDAMTPAEIT DALSLHSIKD HDWHIQACCA
LTGEGLYDGL GWIAQRVTGK APT*