VIGGS:GBrowse

Vigan.08G146000.01

Basic Information:

Name:	Vigan.08G146000.01 Multiple alignment Variant Information
Position:	Chr08:12988898..12991297 (+ strand)
Length:	2400

Functional Information:

Description:	Similar to Uncharacterized protein. [Q39890, Glycine max]
GO:	Molecular Function: calcium ion binding (GO:0005509)
InterPro:	EF-hand domain (IPR002048)
	EF-hand domain pair (IPR011992)
	EF-Hand 1, calcium-binding site (IPR018247)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.08,0.06,5.59,7.37,11.07,6.63,25.55,10.13
Arabidopsis thaliana homolog:	AT3G22930.1

Automatic updates:

Name:	NM_001249241 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max EF hand calcium-binding family protein (LOC100500308), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250973 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max calmodulin (SCAM-4), mRNA.
PubMed ID:	24254124 NCBI(pubmed)
	19667066 NCBI(pubmed)
	18347016 NCBI(pubmed)
	17485478 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:12988898..12989387 (+ strand)
Length:	490
Type:	five_prime_UTR

Position:	Chr08:12989388..12989469 (+ strand)
Length:	82
Type:	CDS

Position:	Chr08:12989613..12989770 (+ strand)
Length:	158
Type:	CDS

Position:	Chr08:12989914..12989994 (+ strand)
Length:	81
Type:	CDS

Position:	Chr08:12990675..12990812 (+ strand)
Length:	138
Type:	CDS

Position:	Chr08:12990813..12991297 (+ strand)
Length:	485
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G146000.01
TGGAAATTGG AAATTGGAAA TTGATGAGGA CGCAGACTCT ACACTCTTCC CCATACTCCA TACTCTCTAC CCTTTCAACT
TTCAATTAAG CTCTTTTCTT TTGTCCCCTA AACACCAAAC CCTTCCAGCT GTCAATATTT TCACTGCATT ATATTAATCA
AATAAATATC ATTACTTATT ATAAAATCAT TCACTGCATT TAAATCATCC TGCCCCACCA CCTCCACCAC CCCATTTATG
TACTAACAAT TACTCTCTCA TTCTTCTTTC CACCTTAATG CCACAAGTAT AACAACAAAA TGCAGCCATT AAAACTTATT
TTGACTTGGT AAATTCAAAT TTTAAACCAA ATCTTCCAAG ACTGGCTACC ATCACTCAAC TTCTACATAT ACCCCAGCTA
AGATTGAGCT ATACTCAACA ATACAACTCT CTCTCTTCCC CTTCTCTCTA TCTCTCTTTC TCTTTTTCTT GTTTGAAAAA
CAAATACACC ATGACTATGA CAGATGTCTT GAGTGAAGAA CAGATTGTTG ATTTTAAGGA GGCTTTTGGG TTGTTTGATA
AAGATGGAGA TGGCTGCATT ACTGTGGAAG AACTGGCCAC TGTCATTCGG TCATTGGATC AGAACCCCAC AGAAGAAGAG
CTCCAAGATA TGATAAGTGA GGTCGATGCA GATGGCAATG GAACCATTGA ATTTGACGAG TTTTTGAGCT TGATGGCCAA
GAAAGTGAAA GACACTGATG CAGAAGAAGA GCTCAAAGAG GCTTTCAAGG TTTTTGACAA AGATCAAAAT GGCTATATAT
CAGCTAGTGA GTTGAGACAC GTAATGATCA ACCTAGGAGA AAAACTGACT GATGAGGAAG TGGAGCAGAT GATTAAAGAA
GCAGATTTGG ACGGTGATGG CCAAGTTAAC TATGATGAAT TTGTCAAGAT GATGATGACA GTTAGATGAA GCACTCACCT
AATTGAATTG GATAAATTGT TATTATTCGA ATTTCATTGG CTTCCAATCT TCCTCCCAGG AAATAATGTG TGGTTATTAT
TGTTTCTTTG TTGTATTGTA TTGTACTTAG CAATGACCGA GTAGTAAAAT GGCTAGTCAA CCCCCCAGTG GATTTGATCC
ATTCCAACTC AAAATTAAAT TAATATTCTT GTAATTTTGG TTCAATATTT TCTGTGCTCC CAGGGTAAGA AAGCCTTAAT
TGGTTCATAT TTACCATTAG ATATGTATGA CTTTTACCAA GTGACATAGG TCTCAGATTA TATCAATTGG TAGTTTGTTG
TATCATGGAG TTTGAAATTT TCCTTCCTTC TGTAGCATGG CAGAAATGAT CTGAAACATG TGACTTGGAA AATGGACCTC
CACATATATT AATGCTACAT TAAATTTATA ACAAAGAAAT TAAGGTTTGA TTACTTGGAG GAAACTTATA CATT

[show][hide][copy]CDS

>Vigan.08G146000.01
ATGACTATGA CAGATGTCTT GAGTGAAGAA CAGATTGTTG ATTTTAAGGA GGCTTTTGGG TTGTTTGATA AAGATGGAGA
TGGCTGCATT ACTGTGGAAG AACTGGCCAC TGTCATTCGG TCATTGGATC AGAACCCCAC AGAAGAAGAG CTCCAAGATA
TGATAAGTGA GGTCGATGCA GATGGCAATG GAACCATTGA ATTTGACGAG TTTTTGAGCT TGATGGCCAA GAAAGTGAAA
GACACTGATG CAGAAGAAGA GCTCAAAGAG GCTTTCAAGG TTTTTGACAA AGATCAAAAT GGCTATATAT CAGCTAGTGA
GTTGAGACAC GTAATGATCA ACCTAGGAGA AAAACTGACT GATGAGGAAG TGGAGCAGAT GATTAAAGAA GCAGATTTGG
ACGGTGATGG CCAAGTTAAC TATGATGAAT TTGTCAAGAT GATGATGACA GTTAGATGA

[show][hide][copy]PROTEIN

>Vigan.08G146000.01
MTMTDVLSEE QIVDFKEAFG LFDKDGDGCI TVEELATVIR SLDQNPTEEE LQDMISEVDA DGNGTIEFDE FLSLMAKKVK
DTDAEEELKE AFKVFDKDQN GYISASELRH VMINLGEKLT DEEVEQMIKE ADLDGDGQVN YDEFVKMMMT VR*