GBrowse Details

Vigan.08G148300.01

Basic Information:
Name: Vigan.08G148300.01
Multiple alignment
Variant Information
Position: Chr08:13185049..13187691 (+ strand)
Length: 2643
Functional Information:
Description: Similar to peroxidase 47. [XP_003556410.1, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.06,6.95,9.61,1.19,28.15,38.67,38.00
Automatic updates:
Name: BT096418 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-20B6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354788 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxidase superfamily protein (LOC100776019), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13185049..13185102 (+ strand)
Length: 54
Type: five_prime_UTR
Position: Chr08:13185103..13185357 (+ strand)
Length: 255
Type: CDS
Position: Chr08:13186026..13186214 (+ strand)
Length: 189
Type: CDS
Position: Chr08:13186334..13186496 (+ strand)
Length: 163
Type: CDS
Position: Chr08:13186958..13187337 (+ strand)
Length: 380
Type: CDS
Position: Chr08:13187338..13187691 (+ strand)
Length: 354
Type: three_prime_UTR


>Vigan.08G148300.01
CCTCATTCCT CTCCCTGCAA ACACAGTATA TATAAGTGTC TTTGTTTTGT GAAGATGTTG TACAAATCAT GTGTGAGGCC
TTCAAAGGTC ATCATGGCAA ACTTTCTTAC ATTACTGCTG TTGTTGCTAA TTCAAGTCTT TGCATATGGC TTCAGATACG
GAGCAGATGG CTTGAACATG AACTACTACT TGATGAGTTG CCCTTTCCTT GAACCTGTTG TTAAGAACAC TGTCAACAGA
GCTTTGCTGG AAGACCCCAC TCTCGCAGCT GCTCTTATCA GAATGCACTT TCATGACTGC TTCATTCAGG GATGCGATGG
CTCGGTTTTG ATTGACTCCA CTAAGGATAA TACAGCAGAA AAGGATTCTC CAGGAAATCT GAGCCTGAGA GGCTTCGAAG
TCATAGATGC TATCAAAGAA GAGCTTGAAA TTCAATGCCC TGGTGTGGTT TCATGTGCTG ATATTCTCGC CATGGCTGCT
AGAGATGCAG TTTTCTTTGC AGGAGGACCG GTATATGACA TACCTAAAGG AAGAAAGGAT GGAAGAAGAT CCAAAATTGA
GGATACTATC AATTTACCAT TCCCTACTTT CAATGCCTCT GAGCTCATTA GGTCGTTTGG CCAACGTGGT TTTTCTGCAC
AAGAGATGGT GGCTCTCTCT GGGGCTCATA CACTGGGAGT GGCAAGTTGT GGTTCTTTCA AGAACCGGTT GAGCCAAGTG
GATCCAACTT TGGACACAGA ATTTGCCAAG ACACTTGCGA GAACATGCAG TTCTGGTGAC AACGCAAAGC AACCATTCGA
TGCGACGAGT AACGATTTTG ACAACGTTTA CTTCAACGCT TTGTTGAGGA GAGACGGGGT TCTTACATCA GACCAAACAC
TGTACACTAG CCCCAAAACC AGGAACTTTG TGAACGCTTA TGCATTCAAC CAAGCCATGT TCTTTTTTGA TTTCCAACAA
GCTATGGTGA AGATGGGTCT GCTTGATGTC AAAGACAATT ACAATGGTGA AGTACGCCAA AATTGTCGCA AAATAAACTG
AATGATGAAT TCTGGCTTTG TGATTGTTTT AGGTTTCAGG CAAACCTCAA TCCTTGCCAC TAGTTAAAAC TACATGATAT
GCATATTATA TGTTATATGC TTAATTAGGT TGTTCTATTT GGTATCCCTT GGATGTATTG TGTTCATATT TATATGCCTG
TAATCCTATG CTGGATGTAG TAAGTACTTT TTATGAGTAT TGTGGGGTTG CAATTAGTAA TTGTGGGACT GCAAGATGCA
ATTGCCTTGG GGTCTTGTTC CTGATTTGAT ATATTTGAAC TTCTATACTT TAACCATATG ATTATAACCA GTCACTATTC
ATTTCTAAAG AATAATCAAC ATTCTCTGAT TTTTA

>Vigan.08G148300.01
ATGTTGTACA AATCATGTGT GAGGCCTTCA AAGGTCATCA TGGCAAACTT TCTTACATTA CTGCTGTTGT TGCTAATTCA
AGTCTTTGCA TATGGCTTCA GATACGGAGC AGATGGCTTG AACATGAACT ACTACTTGAT GAGTTGCCCT TTCCTTGAAC
CTGTTGTTAA GAACACTGTC AACAGAGCTT TGCTGGAAGA CCCCACTCTC GCAGCTGCTC TTATCAGAAT GCACTTTCAT
GACTGCTTCA TTCAGGGATG CGATGGCTCG GTTTTGATTG ACTCCACTAA GGATAATACA GCAGAAAAGG ATTCTCCAGG
AAATCTGAGC CTGAGAGGCT TCGAAGTCAT AGATGCTATC AAAGAAGAGC TTGAAATTCA ATGCCCTGGT GTGGTTTCAT
GTGCTGATAT TCTCGCCATG GCTGCTAGAG ATGCAGTTTT CTTTGCAGGA GGACCGGTAT ATGACATACC TAAAGGAAGA
AAGGATGGAA GAAGATCCAA AATTGAGGAT ACTATCAATT TACCATTCCC TACTTTCAAT GCCTCTGAGC TCATTAGGTC
GTTTGGCCAA CGTGGTTTTT CTGCACAAGA GATGGTGGCT CTCTCTGGGG CTCATACACT GGGAGTGGCA AGTTGTGGTT
CTTTCAAGAA CCGGTTGAGC CAAGTGGATC CAACTTTGGA CACAGAATTT GCCAAGACAC TTGCGAGAAC ATGCAGTTCT
GGTGACAACG CAAAGCAACC ATTCGATGCG ACGAGTAACG ATTTTGACAA CGTTTACTTC AACGCTTTGT TGAGGAGAGA
CGGGGTTCTT ACATCAGACC AAACACTGTA CACTAGCCCC AAAACCAGGA ACTTTGTGAA CGCTTATGCA TTCAACCAAG
CCATGTTCTT TTTTGATTTC CAACAAGCTA TGGTGAAGAT GGGTCTGCTT GATGTCAAAG ACAATTACAA TGGTGAAGTA
CGCCAAAATT GTCGCAAAAT AAACTGA

>Vigan.08G148300.01
MLYKSCVRPS KVIMANFLTL LLLLLIQVFA YGFRYGADGL NMNYYLMSCP FLEPVVKNTV NRALLEDPTL AAALIRMHFH
DCFIQGCDGS VLIDSTKDNT AEKDSPGNLS LRGFEVIDAI KEELEIQCPG VVSCADILAM AARDAVFFAG GPVYDIPKGR
KDGRRSKIED TINLPFPTFN ASELIRSFGQ RGFSAQEMVA LSGAHTLGVA SCGSFKNRLS QVDPTLDTEF AKTLARTCSS
GDNAKQPFDA TSNDFDNVYF NALLRRDGVL TSDQTLYTSP KTRNFVNAYA FNQAMFFFDF QQAMVKMGLL DVKDNYNGEV
RQNCRKIN*