GBrowse Details

Vigan.08G150800.01

Basic Information:
Name: Vigan.08G150800.01
Multiple alignment
Variant Information
Position: Chr08:13386030..13389423 (+ strand)
Length: 3394
Functional Information:
Description: Similar to coiled-coil domain-containing protein 12-like isoform X2. [XP_004495491.1, Cicer arietinum]
InterPro: mRNA splicing factor, Cwf18 (IPR013169)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.46,38.26,20.31,27.88,28.19,22.19,18.85,18.94
Arabidopsis thaliana homolog: AT3G05070.1
Automatic updates:
Name: NM_001251122 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cwf18 domain-containing protein (LOC100306131), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13386030..13386240 (+ strand)
Length: 211
Type: five_prime_UTR
Position: Chr08:13386241..13386386 (+ strand)
Length: 146
Type: CDS
Position: Chr08:13386466..13386589 (+ strand)
Length: 124
Type: CDS
Position: Chr08:13386684..13386798 (+ strand)
Length: 115
Type: CDS
Position: Chr08:13389005..13389066 (+ strand)
Length: 62
Type: CDS
Position: Chr08:13389067..13389423 (+ strand)
Length: 357
Type: three_prime_UTR


>Vigan.08G150800.01
ACCGGTATAA AACGAAGACA AAGACAGATG AATTGAACAG TAGGCACTGG GTGGGATATT GGCCATTGCA TTTGGAAGAA
GTGATTTTGT GAGTGTGTAG AAAGATTAGG GTTTTGTGTG CGTTTGTATA GAGTAGAAGA AGAAGAATTA GGGTTTGTGT
ATACGTAGAT ACAGAGAGAT AGTGTAGAAG AAAGTTTGAT TGAGGGAAAA AATGGGTAGT GAAGAGGATT CGATCGAGCA
AAGCGTTGCG TCCCGTCGCG AGAGACTGCT TGCTCTCAGA GCGGCTCAAG AGTTGTCCAG TGCTCCCGAA CCAAAGGACA
ACGACGATGC TGAAGAAGAA GAAGATCAAC AACAAGAAAT GAAGTTTCGT AACTACGTTC CTCATGACAA GAACCTTCAG
GAAGGGAAGC TTGCCCCTGC TGTGCTCCCC AAGTTCGAAG ACCCTGTCGA TGTGCCTCCA CTCGAACCTC AGGCTCAGGA
GGATCCGTTT CTGAATATTG CTCCGAAGAA ACCTAACTGG GACCTGCGGA GAGATGTGCA GAAGAAGTTT GATAAGCTGG
AGAAGCGAAC TCAGAAGGCT CTCTATCAGC TCATGGTGGA ACAAGAGAAG CAAAAACAAT TGACTGAAGG AGATGATACA
AATGGCACAG CAGAGTAGAT TGCAATTTGT TACGGAAACT GAAAGATATG GAAGCAATAT TTTGAGAACT CCTGTTCCAT
TTAAGCGTGT TATTAACGCA TAAAGAATAG GAATCTGACA CAGATTTAGC ATTGTATCGT GAATTTCGTA TCATTCACTT
CTCTTTCCAT GAACAAGTTT GAGTATATTA GATATGTTTG TAGAGGTGAA TATCCCTGGG ATTCTGATAG TTGTATCAAT
TAGTTTATAC ATAACACTAC TCAAATATGG GAAGATTTAA TTTATTTTCC TCTTTTATGT TCCCTGGCCG GGGATTGTTT
TAAATATTCG TACCTCAATG TTCAGCATTG ATGATATTTT TTTTTAAAAT ATTCT

>Vigan.08G150800.01
ATGGGTAGTG AAGAGGATTC GATCGAGCAA AGCGTTGCGT CCCGTCGCGA GAGACTGCTT GCTCTCAGAG CGGCTCAAGA
GTTGTCCAGT GCTCCCGAAC CAAAGGACAA CGACGATGCT GAAGAAGAAG AAGATCAACA ACAAGAAATG AAGTTTCGTA
ACTACGTTCC TCATGACAAG AACCTTCAGG AAGGGAAGCT TGCCCCTGCT GTGCTCCCCA AGTTCGAAGA CCCTGTCGAT
GTGCCTCCAC TCGAACCTCA GGCTCAGGAG GATCCGTTTC TGAATATTGC TCCGAAGAAA CCTAACTGGG ACCTGCGGAG
AGATGTGCAG AAGAAGTTTG ATAAGCTGGA GAAGCGAACT CAGAAGGCTC TCTATCAGCT CATGGTGGAA CAAGAGAAGC
AAAAACAATT GACTGAAGGA GATGATACAA ATGGCACAGC AGAGTAG

>Vigan.08G150800.01
MGSEEDSIEQ SVASRRERLL ALRAAQELSS APEPKDNDDA EEEEDQQQEM KFRNYVPHDK NLQEGKLAPA VLPKFEDPVD
VPPLEPQAQE DPFLNIAPKK PNWDLRRDVQ KKFDKLEKRT QKALYQLMVE QEKQKQLTEG DDTNGTAE*