GBrowse Details

Vigan.08G153800.01

Basic Information:
Name: Vigan.08G153800.01
Multiple alignment
Variant Information
Position: Chr08:13721296..13727658 (+ strand)
Length: 6363
Functional Information:
Description: Similar to Uncharacterized protein. [I1LBW2, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: aspartic-type endopeptidase activity (GO:0004190)
InterPro: Aspartic peptidase (IPR001461)
Aspartic peptidase domain (IPR021109)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.49,21.18,14.46,16.49,10.69,9.73,16.81,25.55
Arabidopsis thaliana homolog: AT1G05840.1
Automatic updates:
Name: NM_001255310 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max aspartyl protease family protein (LOC100801883), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13721296..13721539 (+ strand)
Length: 244
Type: five_prime_UTR
Position: Chr08:13721540..13721742 (+ strand)
Length: 203
Type: CDS
Position: Chr08:13722174..13722303 (+ strand)
Length: 130
Type: CDS
Position: Chr08:13722404..13722651 (+ strand)
Length: 248
Type: CDS
Position: Chr08:13722998..13723225 (+ strand)
Length: 228
Type: CDS
Position: Chr08:13724012..13724174 (+ strand)
Length: 163
Type: CDS
Position: Chr08:13724247..13724320 (+ strand)
Length: 74
Type: CDS
Position: Chr08:13725167..13725257 (+ strand)
Length: 91
Type: CDS
Position: Chr08:13725666..13725744 (+ strand)
Length: 79
Type: CDS
Position: Chr08:13726239..13726310 (+ strand)
Length: 72
Type: CDS
Position: Chr08:13727381..13727523 (+ strand)
Length: 143
Type: CDS
Position: Chr08:13727524..13727658 (+ strand)
Length: 135
Type: three_prime_UTR


>Vigan.08G153800.01
TGTTGGTCGG TTTTTTATTT TTATTTTTAA AATTTTGTTG TTGGTTGTTC TCATTCCACA ATAATCCTCT CCATTGCCGA
ATTAACCTTT TTCAATATAA CGGACCGAAC ACGGCAAAAC CATTACACCT TTACGCCAAA GCACCGAAAC GAGTCGCATC
GAGCTTCATT GAGCTGTGCT GGATCTGTTG CTACTATTTC TTTGATTCTT TCTGTTGAAT TGAACTAGTT AGGCTACTGA
ATTAATGGAT CCGAGAGGTT TAGTGATATT GGTGGCGATT CTAGTTGCGG AAATGAGTTG CGTTGCCGAC GGAACTTTAG
TGTTTCCGGT GGAGCGTCAG AAAAGGAGTT TAAGCGCTAT CAAAGCTCAC GATGCTCAAC GTCGAGGTCG AATTCTCTCC
GCCGTGGATC TCAACCTTGG CGGCAATGGT GTCCCTACTA ATACTGGTCT GTATTATACA AAACTTGGGC TTGGCTCTCC
TCCGAAGGAT TATTATGTGC AAGTTGATAC AGGAAGTGAC ATTCTGTGGG TGAATTGCGT TGAGTGTTCG AGATGTCCCA
GGAAAAGTGA TCTCGGTATA GAATTGACTC TTTATGACCC AAAGAGCTCT GAAACTGCAG AGCTGGTTTC TTGTGAGCAA
GACTTTTGTG CTGCCGCGTA TGATGGTCCA ATGCCTGGGT GCAAGTCTGA AATTCCATGC CCCTACAGCA TAACTTATGG
AGACGGAAGT GCAACTTCTG GATACTATGT CCAGGATTAT CTTACTTATA ACCGTGTCAA TGGAAATCTT CTTACTACGC
CACAAAATAG CAGTATCATT TTTGGGTGTG GCGCTGTACA ATCTGGGACA TTGGGTTCAT CTTCTGAACA AGCCCTTGAC
GGAATAATGG GTTTTGGACA AGCAAATTCT TCTGTACTTT CTCAGCTTGC TGCATCTGGA AAGGTGAAAA AAATATTTTC
ACATTGCCTT GACAATATTC GTGGTGGTGG AATATTTGCC ATCGGGGAAG TGGTGGAACC AAAAGTTAGT ACAACTCCAT
TGGTACCAAG AATGGCACAC TATAACGTAG TTTTGAAGAC TATTGAGGTT GATACAGATA CACTACAGCT TCCCTCGGAT
ATATTTGAGT CTGGAAATGG GAGGGGGACA ATAATAGATA GTGGAACAAC CTTGGCTTAT CTTCCTGGGT TAGTTTATGA
CCAACTGATG CAAAAGGTTT TGACCCGGCA GCCTGGACTG AAATTATATC TTGTTGAACA ACAATTTAGT TGTTTTCAGT
ATGCTGGAAA TGTTGATCGT GGATTTCCAG TTGTCAAGTT TCATTTTGAG GATTCTCTTT CTCTGACAGT TTATCCTCAC
GACTACCTGT TTGATTTTAA TGATGGTCGT ATGTGGTGTA TCGGCTGGCA GAAAAGTGTG TCACAAGCCA AGAATGGAAA
GGACATGACC CTTCTTGGAG ATTTGGTGCT ATCCAATAAA GTAGTGATAT ATGATCTTGA AAATATGGCC ATTGGATGGA
CCGACTACAA CTGCTCTTCC AGCATTAAAG TGAAGGATGA AGCCACCGGA GCAGTGCGTA CTGTGGGTGC ACACGATATT
TCTTCAGTTT CTACCTGTTT TATTGGAAGA ATACTGACTT TCTTTTTGTT GCTAATTGCG ATTCTAAACT ATTAAATTAA
CTTGGTTTTG ATATTCATTT TATTTTGTTG TACCATAATT CCTTGAATGA TAAGGTGTGC AACGTGCTTG ATATGGTATA
ATCAATCATT ACTGGTGTAG ATAGAATTGA CAAAGGTGCA AATATTTTTT 

>Vigan.08G153800.01
ATGGATCCGA GAGGTTTAGT GATATTGGTG GCGATTCTAG TTGCGGAAAT GAGTTGCGTT GCCGACGGAA CTTTAGTGTT
TCCGGTGGAG CGTCAGAAAA GGAGTTTAAG CGCTATCAAA GCTCACGATG CTCAACGTCG AGGTCGAATT CTCTCCGCCG
TGGATCTCAA CCTTGGCGGC AATGGTGTCC CTACTAATAC TGGTCTGTAT TATACAAAAC TTGGGCTTGG CTCTCCTCCG
AAGGATTATT ATGTGCAAGT TGATACAGGA AGTGACATTC TGTGGGTGAA TTGCGTTGAG TGTTCGAGAT GTCCCAGGAA
AAGTGATCTC GGTATAGAAT TGACTCTTTA TGACCCAAAG AGCTCTGAAA CTGCAGAGCT GGTTTCTTGT GAGCAAGACT
TTTGTGCTGC CGCGTATGAT GGTCCAATGC CTGGGTGCAA GTCTGAAATT CCATGCCCCT ACAGCATAAC TTATGGAGAC
GGAAGTGCAA CTTCTGGATA CTATGTCCAG GATTATCTTA CTTATAACCG TGTCAATGGA AATCTTCTTA CTACGCCACA
AAATAGCAGT ATCATTTTTG GGTGTGGCGC TGTACAATCT GGGACATTGG GTTCATCTTC TGAACAAGCC CTTGACGGAA
TAATGGGTTT TGGACAAGCA AATTCTTCTG TACTTTCTCA GCTTGCTGCA TCTGGAAAGG TGAAAAAAAT ATTTTCACAT
TGCCTTGACA ATATTCGTGG TGGTGGAATA TTTGCCATCG GGGAAGTGGT GGAACCAAAA GTTAGTACAA CTCCATTGGT
ACCAAGAATG GCACACTATA ACGTAGTTTT GAAGACTATT GAGGTTGATA CAGATACACT ACAGCTTCCC TCGGATATAT
TTGAGTCTGG AAATGGGAGG GGGACAATAA TAGATAGTGG AACAACCTTG GCTTATCTTC CTGGGTTAGT TTATGACCAA
CTGATGCAAA AGGTTTTGAC CCGGCAGCCT GGACTGAAAT TATATCTTGT TGAACAACAA TTTAGTTGTT TTCAGTATGC
TGGAAATGTT GATCGTGGAT TTCCAGTTGT CAAGTTTCAT TTTGAGGATT CTCTTTCTCT GACAGTTTAT CCTCACGACT
ACCTGTTTGA TTTTAATGAT GGTCGTATGT GGTGTATCGG CTGGCAGAAA AGTGTGTCAC AAGCCAAGAA TGGAAAGGAC
ATGACCCTTC TTGGAGATTT GGTGCTATCC AATAAAGTAG TGATATATGA TCTTGAAAAT ATGGCCATTG GATGGACCGA
CTACAACTGC TCTTCCAGCA TTAAAGTGAA GGATGAAGCC ACCGGAGCAG TGCGTACTGT GGGTGCACAC GATATTTCTT
CAGTTTCTAC CTGTTTTATT GGAAGAATAC TGACTTTCTT TTTGTTGCTA ATTGCGATTC TAAACTATTA A

>Vigan.08G153800.01
MDPRGLVILV AILVAEMSCV ADGTLVFPVE RQKRSLSAIK AHDAQRRGRI LSAVDLNLGG NGVPTNTGLY YTKLGLGSPP
KDYYVQVDTG SDILWVNCVE CSRCPRKSDL GIELTLYDPK SSETAELVSC EQDFCAAAYD GPMPGCKSEI PCPYSITYGD
GSATSGYYVQ DYLTYNRVNG NLLTTPQNSS IIFGCGAVQS GTLGSSSEQA LDGIMGFGQA NSSVLSQLAA SGKVKKIFSH
CLDNIRGGGI FAIGEVVEPK VSTTPLVPRM AHYNVVLKTI EVDTDTLQLP SDIFESGNGR GTIIDSGTTL AYLPGLVYDQ
LMQKVLTRQP GLKLYLVEQQ FSCFQYAGNV DRGFPVVKFH FEDSLSLTVY PHDYLFDFND GRMWCIGWQK SVSQAKNGKD
MTLLGDLVLS NKVVIYDLEN MAIGWTDYNC SSSIKVKDEA TGAVRTVGAH DISSVSTCFI GRILTFFLLL IAILNY*