GBrowse Details

Vigan.08G154900.01

Basic Information:
Name: Vigan.08G154900.01
Multiple alignment
Variant Information
Position: Chr08:13808760..13814382 (- strand)
Length: 5623
Functional Information:
Description: Similar to Uncharacterized protein. [I1NIJ9, Glycine max]
InterPro: Translation release factor pelota-like (IPR004405)
eRF1 domain 1/Pelota-like (IPR005140)
eRF1 domain 2 (IPR005141)
eRF1 domain 3 (IPR005142)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.99,20.36,5.76,6.58,6.37,6.04,2.68,6.09
Arabidopsis thaliana homolog: AT3G58390.1, AT4G27650.1
Automatic updates:
Name: NM_001255275 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein pelota-like (LOC100793935), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13808760..13809240 (- strand)
Length: 481
Type: three_prime_UTR
Position: Chr08:13809241..13809314 (- strand)
Length: 74
Type: CDS
Position: Chr08:13809586..13809692 (- strand)
Length: 107
Type: CDS
Position: Chr08:13810074..13810168 (- strand)
Length: 95
Type: CDS
Position: Chr08:13810953..13810991 (- strand)
Length: 39
Type: CDS
Position: Chr08:13811109..13811181 (- strand)
Length: 73
Type: CDS
Position: Chr08:13811487..13811593 (- strand)
Length: 107
Type: CDS
Position: Chr08:13811749..13811817 (- strand)
Length: 69
Type: CDS
Position: Chr08:13812370..13812402 (- strand)
Length: 33
Type: CDS
Position: Chr08:13812491..13812566 (- strand)
Length: 76
Type: CDS
Position: Chr08:13812813..13812888 (- strand)
Length: 76
Type: CDS
Position: Chr08:13813265..13813310 (- strand)
Length: 46
Type: CDS
Position: Chr08:13813560..13813616 (- strand)
Length: 57
Type: CDS
Position: Chr08:13813701..13813775 (- strand)
Length: 75
Type: CDS
Position: Chr08:13813847..13813925 (- strand)
Length: 79
Type: CDS
Position: Chr08:13814020..13814102 (- strand)
Length: 83
Type: CDS
Position: Chr08:13814183..13814233 (- strand)
Length: 51
Type: CDS
Position: Chr08:13814234..13814382 (- strand)
Length: 149
Type: five_prime_UTR


>Vigan.08G154900.01
TGAAGGCAGT AATTACAGTG GGGCTAGAAG TAACAGCCCG AGCCATTGTT TGGTGACAGT GAGTGGGGAC GTGCGCTTTC
AACCGTCGTT TCAAGGAGAG AGAGAAAAGG AAGAAAGTGC GGTGTTTAGC GCCGGTGGTA TCCACAGCCA TGAGGATCGT
TCGCAGAGAC ATCGTTCCTA ATGGACCTGG TAGCGTTAAG ATGGTGGCGG TGGATTCCGA TGATCTGTGG TTTGCGTATA
ACTTGATTGC TCCCGGAGAC TCTGTCATGG CCGTTACTGT TAGGAAGGTT GTTAGAGAGG CCGCTCATGG CGGTCGAGAT
GCAGAGCGCG TTAAGCTCAA ACTGGAAATT AAAGTCGAAG AGGTTGCTGA TTATGACAAA GAAGGTTCTA TTCTGCGTGT
TCGTGGAAAG AACATTTTAG AGAATGAACA TGTCAAGATA GGAGCTTTCC ATACTCTAGA ACTTGAACTG CAGCGACCGT
TTGTGGTCAG AAAGGATGTT TGGGATTCTT TGGCTTTGGA GGTGCTACAG CAGGCCTCTG ATCCTGGTGC AAGTGCTGAT
CTAGCAGTGG TGTTGATGCA GGAAGGATTA GCTCATATCC TCCTTGTTGG TAGAAGTATG ACTGTTACTC GATCGCGGAT
AGAAACATCT ATTCCTCGCA AGCATGGGCC TGCAATTGCT GGTTATGAGA AAGCTTTGGA TAAGTTCTTC GAGAATGTTA
TGCAGGCTTT CTTGAAACAT ATCGATTTCA ACGTGGTTCG TTGTGCTGTA ATTGCAAGTC CAGGATTTAC AAAGGATCAG
TTTCATCGTC ACTTATTTTT GGAGGCAGAA CGAAGACAGT TGCGACCTAT TATTGAAAAC AAATCACGCA TCATTCTTGT
GCATACAACT TCAGGATACA AGCATAGTTT AAGGGAGGTT TTGGATGCTC CAAATGTCAT GAATTTGATA AAAGATACTA
AAGCAGCACA AGAGGTTCGA GTTATGAAGG ATTTCTTCAA CATGCTTTCA AATGATCCAT CACGCGCATG TTATGGAATG
AAACATGTTG AGGTTGCCAA TGAACGCCTA GCTGTACAAA CTCTTCTCAT CACAGATGAT CTTTTCAGGA ATTCAGATAT
ATCAACAAGA CAAAAGTTTG TTAACTTGGT CAACTCTGTT AAGGATTCAG GAGGATCTGT CCATGTATTT TCATCCATGC
ATGTCTCTGG AGAGCAACTA GCCCAGATAA GTGGCATTGC TGCAATTCTT CGGTTTCCTC TCCCAGATCT TGAAGACATT
GAGATGTGAT GGATAATGTT GGTCAAGCAT GTTAGTGTTG GCCATGGCTC CTCTCTGTTT TATTATACTG GACTGGTGTT
GCATCAGTCC CTGAGTACTC CCTGCGGATT TCTGGATAAT TGAACGAGGA ATTTGTACTA TAAACCACAA TGCCAATTAA
TAGTTGCAAG TCATTTATCA CCCAGTGTTC CATATTTTTG GGTGAATTCC TTTGCTCATT GGTCTTTGTA TTGAAAATTG
ATACTTTCCA ATTTCCCATC ATGTATATGA ATCTGTTGAG TAATTATGAT TGTAAACAGT CCTGTAATCC CTAGCTAAAG
GGGATAATTG TTGATGTTCA AATGCTAAAA GCTATGGAGT GAGCAAATTG GTTTAGGAGA ACCGAGTTTT TCTGGAGATT
GTGGCAAGCG TGCAACTGTC TAAAATAATA GACTAATAGT TGGCTAATAT ATTGTTTTTG GAAATGAATG TTTATAATTT
TTTTTTTAAA 

>Vigan.08G154900.01
ATGAGGATCG TTCGCAGAGA CATCGTTCCT AATGGACCTG GTAGCGTTAA GATGGTGGCG GTGGATTCCG ATGATCTGTG
GTTTGCGTAT AACTTGATTG CTCCCGGAGA CTCTGTCATG GCCGTTACTG TTAGGAAGGT TGTTAGAGAG GCCGCTCATG
GCGGTCGAGA TGCAGAGCGC GTTAAGCTCA AACTGGAAAT TAAAGTCGAA GAGGTTGCTG ATTATGACAA AGAAGGTTCT
ATTCTGCGTG TTCGTGGAAA GAACATTTTA GAGAATGAAC ATGTCAAGAT AGGAGCTTTC CATACTCTAG AACTTGAACT
GCAGCGACCG TTTGTGGTCA GAAAGGATGT TTGGGATTCT TTGGCTTTGG AGGTGCTACA GCAGGCCTCT GATCCTGGTG
CAAGTGCTGA TCTAGCAGTG GTGTTGATGC AGGAAGGATT AGCTCATATC CTCCTTGTTG GTAGAAGTAT GACTGTTACT
CGATCGCGGA TAGAAACATC TATTCCTCGC AAGCATGGGC CTGCAATTGC TGGTTATGAG AAAGCTTTGG ATAAGTTCTT
CGAGAATGTT ATGCAGGCTT TCTTGAAACA TATCGATTTC AACGTGGTTC GTTGTGCTGT AATTGCAAGT CCAGGATTTA
CAAAGGATCA GTTTCATCGT CACTTATTTT TGGAGGCAGA ACGAAGACAG TTGCGACCTA TTATTGAAAA CAAATCACGC
ATCATTCTTG TGCATACAAC TTCAGGATAC AAGCATAGTT TAAGGGAGGT TTTGGATGCT CCAAATGTCA TGAATTTGAT
AAAAGATACT AAAGCAGCAC AAGAGGTTCG AGTTATGAAG GATTTCTTCA ACATGCTTTC AAATGATCCA TCACGCGCAT
GTTATGGAAT GAAACATGTT GAGGTTGCCA ATGAACGCCT AGCTGTACAA ACTCTTCTCA TCACAGATGA TCTTTTCAGG
AATTCAGATA TATCAACAAG ACAAAAGTTT GTTAACTTGG TCAACTCTGT TAAGGATTCA GGAGGATCTG TCCATGTATT
TTCATCCATG CATGTCTCTG GAGAGCAACT AGCCCAGATA AGTGGCATTG CTGCAATTCT TCGGTTTCCT CTCCCAGATC
TTGAAGACAT TGAGATGTGA 

>Vigan.08G154900.01
MRIVRRDIVP NGPGSVKMVA VDSDDLWFAY NLIAPGDSVM AVTVRKVVRE AAHGGRDAER VKLKLEIKVE EVADYDKEGS
ILRVRGKNIL ENEHVKIGAF HTLELELQRP FVVRKDVWDS LALEVLQQAS DPGASADLAV VLMQEGLAHI LLVGRSMTVT
RSRIETSIPR KHGPAIAGYE KALDKFFENV MQAFLKHIDF NVVRCAVIAS PGFTKDQFHR HLFLEAERRQ LRPIIENKSR
IILVHTTSGY KHSLREVLDA PNVMNLIKDT KAAQEVRVMK DFFNMLSNDP SRACYGMKHV EVANERLAVQ TLLITDDLFR
NSDISTRQKF VNLVNSVKDS GGSVHVFSSM HVSGEQLAQI SGIAAILRFP LPDLEDIEM*