GBrowse Details

Vigan.08G154900.01

Basic Information:
Name: Vigan.08G154900.01
Multiple alignment
Variant Information
Position: Chr08:13808760..13814382 (- strand)
Length: 5623
Functional Information:
Description: Similar to Uncharacterized protein. [I1NIJ9, Glycine max]
InterPro: Translation release factor pelota-like (IPR004405)
eRF1 domain 1/Pelota-like (IPR005140)
eRF1 domain 2 (IPR005141)
eRF1 domain 3 (IPR005142)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.99,20.36,5.76,6.58,6.37,6.04,2.68,6.09
Arabidopsis thaliana homolog: AT3G58390.1, AT4G27650.1
Automatic updates:
Name: NM_001255275 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein pelota-like (LOC100793935), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13808760..13809240 (- strand)
Length: 481
Type: three_prime_UTR
Position: Chr08:13809241..13809314 (- strand)
Length: 74
Type: CDS
Position: Chr08:13809586..13809692 (- strand)
Length: 107
Type: CDS
Position: Chr08:13810074..13810168 (- strand)
Length: 95
Type: CDS
Position: Chr08:13810953..13810991 (- strand)
Length: 39
Type: CDS
Position: Chr08:13811109..13811181 (- strand)
Length: 73
Type: CDS
Position: Chr08:13811487..13811593 (- strand)
Length: 107
Type: CDS
Position: Chr08:13811749..13811817 (- strand)
Length: 69
Type: CDS
Position: Chr08:13812370..13812402 (- strand)
Length: 33
Type: CDS
Position: Chr08:13812491..13812566 (- strand)
Length: 76
Type: CDS
Position: Chr08:13812813..13812888 (- strand)
Length: 76
Type: CDS
Position: Chr08:13813265..13813310 (- strand)
Length: 46
Type: CDS
Position: Chr08:13813560..13813616 (- strand)
Length: 57
Type: CDS
Position: Chr08:13813701..13813775 (- strand)
Length: 75
Type: CDS
Position: Chr08:13813847..13813925 (- strand)
Length: 79
Type: CDS
Position: Chr08:13814020..13814102 (- strand)
Length: 83
Type: CDS
Position: Chr08:13814183..13814233 (- strand)
Length: 51
Type: CDS
Position: Chr08:13814234..13814382 (- strand)
Length: 149
Type: five_prime_UTR

>Vigan.08G154900.01 class=Sequence position=Chr08:13808760..13814382 (- strand)
TGAAGGCAGT AATTACAGTG GGGCTAGAAG TAACAGCCCG AGCCATTGTT TGGTGACAGT GAGTGGGGAC GTGCGCTTTC
AACCGTCGTT TCAAGGAGAG AGAGAAAAGG AAGAAAGTGC GGTGTTTAGC GCCGGTGGTA TCCACAGCCA TGAGGATCGT
TCGCAGAGAC ATCGTTCCTA ATGGACCTGG TAGCGTTAAG GTTCAATTCC TATTCTCCAC ACTTCAGTTT CCTTAGTTCC
ATGAAATTTC TTCTTCACGT TTATTCTGTG CACTATGCAG ATGGTGGCGG TGGATTCCGA TGATCTGTGG TTTGCGTATA
ACTTGATTGC TCCCGGAGAC TCTGTCATGG CCGTTACTGT TAGGTGCTAT TTTCTCTCAA TTCTTGCTTT CTTTGATCGC
ATAATCTGTT TTTCAATTTT CATATTTCTT TCGTTTTCTT GCTTGTTGTA TTAATAGGAA GGTTGTTAGA GAGGCCGCTC
ATGGCGGTCG AGATGCAGAG CGCGTTAAGC TCAAACTGGA AATTAAAGTC GAAGAGGTAT TTGTGCTATC AGTAGGATTT
CTGTTCGGTT TTTCAGGTTG TGTTATCTTG ATTTTGTTTT ATACTAGGTT GCTGATTATG ACAAAGAAGG TTCTATTCTG
CGTGTTCGTG GAAAGAACAT TTTAGAGAAT GAACATGTCA AGGTAGTGAA CTGCGACTGT CATCCAGATT TCTTCTCCAA
ATTGTTACTG CCGAACTTAA GTTTTCATCT TTGTAACTCG TTGCAGATAG GAGCTTTCCA TACTCTAGAA CTTGAACTGC
AGCGACCGTT TGTGGTCAGA AAGGTATTTT CTCTTGAATC ATTGTGCTTC TTGTTACAAA TCATTTCGCA ATGTTAAACT
CGTGCTTCAT ATGCATATAA GCCAGGCCTT TTGCTTGCAT CTATCACTGT GCCATTATGG TTAGAATAGA AAATGTAACC
TAAGAAATGA GTGGTGAGGA ATCTTTATGA AAATCACATT GTGATATAGT TCGCAGCCCA CTGGTACCTT TTTGAATCAC
AATTACTGAA TATTATATTC TGCCTCTTGT AGGATGTTTG GGATTCTTTG GCTTTGGAGG TGCTACAGCA GGCCTCTGGT
ACGTATCAAA TTATATGAAT GTCTCAATTC TTTTATAGAT ATTTTATAAT TATGGAAATT TTAGTGGCGT AGTCTGTTTG
CGTGGAAATT ACAAAATATT CTAATTTGAA GAATGAAGAT ATTACTTTAC CTATTTTCAC TTGATAAAGT TGTTGAATTT
CTACTTTATG AGATGTCTTA AATCTCCTGC ACACCTTTAA ATAGTTGTTT TAGAAAAATG GTGGAAAGAA TGAAATAAAT
TATCATATAG AACCAGTCAT GTTTTTCAAG CAAACAAAGG GTTAACAATC CTCATGTGGT CATTTGTTGT CTGACTGTTG
GTGTAAATCT TAGTAATCAA AACTGTGAAT GAAAATCCCA TGCATATTTT GCAGATCCTG GTGCAAGTGC TGATCTAGCA
GTGGTGTTGA TGCAGGAAGG ATTAGCTCAT ATCCTCCTTG TTGGTAGAAG GTTGGCTATA AATTTACTAG GTTTCATTTA
TATGTATTAC TTATAATAGC ATTTTATCCA TAAGATAATT TGCTCAGCAC TCATATTAAA CTTGGTCACT GTTATTTTTG
TTTTGATTTC TGTGGGTAAC CACAAACACT GGAAATTAAA TACACGTTCT GCTTCTTGTT GATACTCTAG TTTATGTTTT
CCATGTAATT GTGTCATTAC AATGAAATGA TTCATCGTAT TAATCCAATA AAACAGTATG ACTGTTACTC GATCGCGGAT
AGAAACATCT ATTCCTCGCA AGCATGGGCC TGCAATTGCT GGTTATGAGA AAGTAAGATC TGTCACCCTA TTGTAAGACG
TCAGTGAATG AATTATATAA CTTGAGTGAT ACAATTCTAA AGCATCCCTC CCTTTTGTAG GCTTTGGATA AGTTCTTCGA
GAATGTTATG CAGGTAAATA AGGACTTAAA TTTCTTATCT TTAGCATTTA TTCTCATTAG TGATACATAT TCCATATTAA
AAAAATTGAA ATGGATTTAC TGTGATTATA ATTTTTTTTT CAATTAAGGT GTTTCTGAAA TTAAAGCTAA TGCTATAATG
CAAATTCAAA CACCCCTCAA AGCTATATCA CCTGATTCTT GTTATGTTAT ATATGTGTAG CTAGTTTTGA ATTGGTGTTC
TTCATTAGTT GACTTATAGC CACTTCCTTT CCCCGAGCAA TGAGATACTC ACGGTAATAA TATCATACCC ATGCACCAAA
TATGGGCATC TTGTTGGATA ATATTAGATG CCTGGATGAG AATGAGAATG CCAGTTATCA AATATCTCCT TATTGTATGA
ATGAATGTAT TTTATATATG TTTCTTTACT CTTGGTTAAG AGGATATTAT CATGATCTTT TGCCCTAGTA TTTCTTTCTT
ATATTTAATC ATATATATTT TACATTCAAC AAAAAGTGTA AAAGGGGCAT TGACAAATAT ACTGGAATTC TACGAATCTG
TTTAGGCTTT CTTGAAACAT ATCGATTTCA ACGTGGTTCG TTGTGCTGTA ATTGCAAGTC CAGGATTTAC AAAGGTGAGC
AATTATTTCC TGTTTGCTTT ATTCGTGGTG AATATTTACA AATTTGATTG TGTGTTTGCA TGTATTATTA TTAATAGTAT
AAAATCATCT TTAGTGGTTT TTGCTTGCTT AAGTGAAGAC CGGATTTTGA AATTCTGTTT CTGTTTCAGG ATCAGTTTCA
TCGTCACTTA TTTTTGGAGG CAGAACGAAG ACAGTTGCGA CCTATTATTG AAAACAAATC ACGCATCATT CTTGTGCATA
CAACTTCAGG ATACAAGTAT GGTTGCTTTC TTTATTTCCA TATTTTCCTA CTTTTTTAGT ATGCTACAAA AGCTTCATAA
GGTAATTAGA ATTAACATGA ACATGTGAAG ATTGTTGTGC TTGCTGATCA ATTAACTGTG GCTTGACTTG CTTAATCTTT
CTTCTGTGTA ATATTCTTAT GTGTATTGAC TAAAAAATAT GGCTGCAAAC ATAGAGTAAC TGACTCTTAT TTTAAGGATT
AACTTTTAAG TTCAATTGCT TGTGGGCACT GCTGTATTTT CTTTATCTTA TCTCTTTAGC CTAATTATTT ATTATCTGTA
GGCATAGTTT AAGGGAGGTT TTGGATGCTC CAAATGTCAT GAATTTGATA AAAGATACTA AAGCAGCACA AGAGGTACCA
TCAAAGCCCG TATCTTTTAC TTTTCTCTTT GGCACTGCTG AAAAAATTCC GTATTATGTT TACTTATTTT ATATTGAGTG
TGGGTTAAGC TTTTATTTCT TTGTTTTTCA GGTTCGAGTT ATGAAGGATT TCTTCAACAT GCTTTCAAAT GTCAGGTTTT
CTTTTCAGAT GCATTTGTTA ACCTTGCCTA TTTTTATGAT TAGAATGCCA TATCCTTATT TTTTAATTGC TTTCAGAATT
AGTTCAACTT AAAAATTATG ATGAAGTTAA AGACACTAAG TTTAGGTGGA TCAATAAGGT CTTTGGTTAA CTTCTATTTG
CTCATAGTCA TATACCTAAA AGAGAAGTAT TGATCTTTTA TACAGTTGCA TGATAAATTG ATCTAATAAT GACTTGTAGT
TAGATGTTTA CTTTATTGAA TTGCATGAGA AGCATATCTT CCATCAAATT TGCTTTCTGT TTTTCATTCT AAGATTTTTA
TTAGGTGTTT AAAATTCAAA TAACATCATA CTTTTATCGA AAGTAAAAGT TATCTCAATT ATATTGTGCT AATACTTTCT
CCTTATTATA CTTCTTACGT AATGATGTTT AGTATTTGTT GAACCCAATC GAGAGTTACC AATGTAACTG GGTGGATGCT
GGGTAAGCTA AAAAAATCAT GTTCCAGAGG ATTTATCATG GGAAACCATT ATTTTTCTGT CTGTTCTACA AAAGTACATT
TTTTTTTTCT TATTCTTGTG CACAAAAAGC ATTAAAAATC TGGTTTAGAG TGAGAATAAA AAATCTAAAG GAAGTATCAC
CTTTGCATAA AAGGAGTACT CATGTTTCTC CCTTGGATTA TTGTCTCTTC AAAGCTGTAG AAACAGCTTA CTTAAATTTT
GCATTTTTAG AAATATAGGA AATCCTGATT GAATATGTAT TTGATGTGGA ACAGGATCCA TCACGCGCAT GTTATGGAAT
GAAACATGTT GAGGTTGCCA ATGAACGCCT AGCTGTACAA ACTCTTCTCA TCACAGATGA TCTTTTCAGG TTTGCATGAT
ATAATCGCAA AATATTCTTA AATGAAAGAC AACATGCCGG ATTGATCTAT CAGATTCATA CTTTGGCTTC CTGCGTCTTT
TTTCTTTTTG TTTGTTTTAT TTTAACCGTG TATCTTATGT ATCTCTTTGT TCATCTTTGA AACTGGTTTA GATCAAACAT
CTTTGCAAAC TACCTTTTAC TTCAGGTTTT GTTTTAAAGA AAGATATTTT GGTTTTTACT TTTGAGCCCG TATAGCATTA
TCACTTAACT TTATCTTTGC ATTTGCTTTC GCATCCTATT TGTTAACTTG GGATTTGGAA TTTAATCCTG AAAATTCTCT
GTTTGATGTT GCCATGGAGT TGTGTCTTCA CTATTTGCTT TTGGTTATAG GAATTCAGAT ATATCAACAA GACAAAAGTT
TGTTAACTTG GTCAACTCTG TTAAGGATTC AGGAGGATCT GTCCATGTAT TTTCATCCAT GCATGTCTCT GGAGAGCGTA
AGTTTTACTA ATTTCATTAT TCTTTAACTT TTTGGGATAT TATTGATCCT AGAAATTCAT TGACTGAGAA TGGTGAACAA
TTATTGAAAA AGAAGGTAAA AGTAATAAGA TCACAATATA TAAACTAAAA CGTTATGCCT TTTTTTCTTC CCCCTTTTGT
TATTTAGAGC TGCTTCACGG AAATAAATGA AATTTCTGAA CAAACATTTT ATGTTCTAAT TTCCTGTCTG TTTGAAATTG
AATATGTCAA CTTTATATTA CTGGACAGAA CTAGCCCAGA TAAGTGGCAT TGCTGCAATT CTTCGGTTTC CTCTCCCAGA
TCTTGAAGAC ATTGAGATGT GATGGATAAT GTTGGTCAAG CATGTTAGTG TTGGCCATGG CTCCTCTCTG TTTTATTATA
CTGGACTGGT GTTGCATCAG TCCCTGAGTA CTCCCTGCGG ATTTCTGGAT AATTGAACGA GGAATTTGTA CTATAAACCA
CAATGCCAAT TAATAGTTGC AAGTCATTTA TCACCCAGTG TTCCATATTT TTGGGTGAAT TCCTTTGCTC ATTGGTCTTT
GTATTGAAAA TTGATACTTT CCAATTTCCC ATCATGTATA TGAATCTGTT GAGTAATTAT GATTGTAAAC AGTCCTGTAA
TCCCTAGCTA AAGGGGATAA TTGTTGATGT TCAAATGCTA AAAGCTATGG AGTGAGCAAA TTGGTTTAGG AGAACCGAGT
TTTTCTGGAG ATTGTGGCAA GCGTGCAACT GTCTAAAATA ATAGACTAAT AGTTGGCTAA TATATTGTTT TTGGAAATGA
ATGTTTATAA TTTTTTTTTT AAA

>Vigan.08G154900.01
TGAAGGCAGT AATTACAGTG GGGCTAGAAG TAACAGCCCG AGCCATTGTT TGGTGACAGT GAGTGGGGAC GTGCGCTTTC
AACCGTCGTT TCAAGGAGAG AGAGAAAAGG AAGAAAGTGC GGTGTTTAGC GCCGGTGGTA TCCACAGCCA TGAGGATCGT
TCGCAGAGAC ATCGTTCCTA ATGGACCTGG TAGCGTTAAG ATGGTGGCGG TGGATTCCGA TGATCTGTGG TTTGCGTATA
ACTTGATTGC TCCCGGAGAC TCTGTCATGG CCGTTACTGT TAGGAAGGTT GTTAGAGAGG CCGCTCATGG CGGTCGAGAT
GCAGAGCGCG TTAAGCTCAA ACTGGAAATT AAAGTCGAAG AGGTTGCTGA TTATGACAAA GAAGGTTCTA TTCTGCGTGT
TCGTGGAAAG AACATTTTAG AGAATGAACA TGTCAAGATA GGAGCTTTCC ATACTCTAGA ACTTGAACTG CAGCGACCGT
TTGTGGTCAG AAAGGATGTT TGGGATTCTT TGGCTTTGGA GGTGCTACAG CAGGCCTCTG ATCCTGGTGC AAGTGCTGAT
CTAGCAGTGG TGTTGATGCA GGAAGGATTA GCTCATATCC TCCTTGTTGG TAGAAGTATG ACTGTTACTC GATCGCGGAT
AGAAACATCT ATTCCTCGCA AGCATGGGCC TGCAATTGCT GGTTATGAGA AAGCTTTGGA TAAGTTCTTC GAGAATGTTA
TGCAGGCTTT CTTGAAACAT ATCGATTTCA ACGTGGTTCG TTGTGCTGTA ATTGCAAGTC CAGGATTTAC AAAGGATCAG
TTTCATCGTC ACTTATTTTT GGAGGCAGAA CGAAGACAGT TGCGACCTAT TATTGAAAAC AAATCACGCA TCATTCTTGT
GCATACAACT TCAGGATACA AGCATAGTTT AAGGGAGGTT TTGGATGCTC CAAATGTCAT GAATTTGATA AAAGATACTA
AAGCAGCACA AGAGGTTCGA GTTATGAAGG ATTTCTTCAA CATGCTTTCA AATGATCCAT CACGCGCATG TTATGGAATG
AAACATGTTG AGGTTGCCAA TGAACGCCTA GCTGTACAAA CTCTTCTCAT CACAGATGAT CTTTTCAGGA ATTCAGATAT
ATCAACAAGA CAAAAGTTTG TTAACTTGGT CAACTCTGTT AAGGATTCAG GAGGATCTGT CCATGTATTT TCATCCATGC
ATGTCTCTGG AGAGCAACTA GCCCAGATAA GTGGCATTGC TGCAATTCTT CGGTTTCCTC TCCCAGATCT TGAAGACATT
GAGATGTGAT GGATAATGTT GGTCAAGCAT GTTAGTGTTG GCCATGGCTC CTCTCTGTTT TATTATACTG GACTGGTGTT
GCATCAGTCC CTGAGTACTC CCTGCGGATT TCTGGATAAT TGAACGAGGA ATTTGTACTA TAAACCACAA TGCCAATTAA
TAGTTGCAAG TCATTTATCA CCCAGTGTTC CATATTTTTG GGTGAATTCC TTTGCTCATT GGTCTTTGTA TTGAAAATTG
ATACTTTCCA ATTTCCCATC ATGTATATGA ATCTGTTGAG TAATTATGAT TGTAAACAGT CCTGTAATCC CTAGCTAAAG
GGGATAATTG TTGATGTTCA AATGCTAAAA GCTATGGAGT GAGCAAATTG GTTTAGGAGA ACCGAGTTTT TCTGGAGATT
GTGGCAAGCG TGCAACTGTC TAAAATAATA GACTAATAGT TGGCTAATAT ATTGTTTTTG GAAATGAATG TTTATAATTT
TTTTTTTAAA 

>Vigan.08G154900.01
ATGAGGATCG TTCGCAGAGA CATCGTTCCT AATGGACCTG GTAGCGTTAA GATGGTGGCG GTGGATTCCG ATGATCTGTG
GTTTGCGTAT AACTTGATTG CTCCCGGAGA CTCTGTCATG GCCGTTACTG TTAGGAAGGT TGTTAGAGAG GCCGCTCATG
GCGGTCGAGA TGCAGAGCGC GTTAAGCTCA AACTGGAAAT TAAAGTCGAA GAGGTTGCTG ATTATGACAA AGAAGGTTCT
ATTCTGCGTG TTCGTGGAAA GAACATTTTA GAGAATGAAC ATGTCAAGAT AGGAGCTTTC CATACTCTAG AACTTGAACT
GCAGCGACCG TTTGTGGTCA GAAAGGATGT TTGGGATTCT TTGGCTTTGG AGGTGCTACA GCAGGCCTCT GATCCTGGTG
CAAGTGCTGA TCTAGCAGTG GTGTTGATGC AGGAAGGATT AGCTCATATC CTCCTTGTTG GTAGAAGTAT GACTGTTACT
CGATCGCGGA TAGAAACATC TATTCCTCGC AAGCATGGGC CTGCAATTGC TGGTTATGAG AAAGCTTTGG ATAAGTTCTT
CGAGAATGTT ATGCAGGCTT TCTTGAAACA TATCGATTTC AACGTGGTTC GTTGTGCTGT AATTGCAAGT CCAGGATTTA
CAAAGGATCA GTTTCATCGT CACTTATTTT TGGAGGCAGA ACGAAGACAG TTGCGACCTA TTATTGAAAA CAAATCACGC
ATCATTCTTG TGCATACAAC TTCAGGATAC AAGCATAGTT TAAGGGAGGT TTTGGATGCT CCAAATGTCA TGAATTTGAT
AAAAGATACT AAAGCAGCAC AAGAGGTTCG AGTTATGAAG GATTTCTTCA ACATGCTTTC AAATGATCCA TCACGCGCAT
GTTATGGAAT GAAACATGTT GAGGTTGCCA ATGAACGCCT AGCTGTACAA ACTCTTCTCA TCACAGATGA TCTTTTCAGG
AATTCAGATA TATCAACAAG ACAAAAGTTT GTTAACTTGG TCAACTCTGT TAAGGATTCA GGAGGATCTG TCCATGTATT
TTCATCCATG CATGTCTCTG GAGAGCAACT AGCCCAGATA AGTGGCATTG CTGCAATTCT TCGGTTTCCT CTCCCAGATC
TTGAAGACAT TGAGATGTGA 

>Vigan.08G154900.01
MRIVRRDIVP NGPGSVKMVA VDSDDLWFAY NLIAPGDSVM AVTVRKVVRE AAHGGRDAER VKLKLEIKVE EVADYDKEGS
ILRVRGKNIL ENEHVKIGAF HTLELELQRP FVVRKDVWDS LALEVLQQAS DPGASADLAV VLMQEGLAHI LLVGRSMTVT
RSRIETSIPR KHGPAIAGYE KALDKFFENV MQAFLKHIDF NVVRCAVIAS PGFTKDQFHR HLFLEAERRQ LRPIIENKSR
IILVHTTSGY KHSLREVLDA PNVMNLIKDT KAAQEVRVMK DFFNMLSNDP SRACYGMKHV EVANERLAVQ TLLITDDLFR
NSDISTRQKF VNLVNSVKDS GGSVHVFSSM HVSGEQLAQI SGIAAILRFP LPDLEDIEM*