VIGGS:GBrowse

Vigan.08G156000.01

Basic Information:

Name:	Vigan.08G156000.01 Multiple alignment Variant Information
Position:	Chr08:13894170..13895396 (+ strand)
Length:	1227

Functional Information:

Description:	Similar to Uncharacterized protein. [C7S8C0, Glycine max]
GO:	Molecular Function: manganese ion binding (GO:0030145)
GO:	Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro:	Germin (IPR001929)
	Cupin 1 (IPR006045)
	RmlC-like cupin domain (IPR011051)
	RmlC-like jelly roll fold (IPR014710)
	Germin, manganese binding site (IPR019780)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.95,0.71,1.01,0.10,8.74,3.95,17.20,0.33
Arabidopsis thaliana homolog:	AT3G05950.1

Automatic updates:

Name:	NM_001253277 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max germin-like protein (GER6), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001254034 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max germin-like protein (GER11), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:13894170..13894294 (+ strand)
Length:	125
Type:	five_prime_UTR

Position:	Chr08:13894295..13894424 (+ strand)
Length:	130
Type:	CDS

Position:	Chr08:13894566..13895116 (+ strand)
Length:	551
Type:	CDS

Position:	Chr08:13895117..13895396 (+ strand)
Length:	280
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G156000.01
CTGAAATCTG TAAAATACAC ATAAATTGCC TCGTCCTATA AATACCTAGC TTCCCATGCT GCAAAATCAT CAACTCTCAC
AAACACTCTC TTACATTTCA CACTAATTAC AAGTTACGAA CAAAAATGAA GGTTGTTCAG TTCCTTGTAG TTCTATTGGC
TTTGGCATCC TCCGTTGCCT TTGCTTATGA TCCAAGCCCT CTGCAAGACT TCTGTGTGGC TATCAATGAT ACCAAAACCG
GTGGTATATA TGGCGTGTTC GTGAATGGAA AATTTTGCAA GGATCCAAAG CTTGCTAATG CTGACGATTT CTTCTATCGT
GGGTTGGGAG CCGGTGACAC TGCTAACCCG TTAGGTTCAA AGGTGACAGC AGTGACTGTT AATGAAATAT TAGGTTTGAA
CACACTTGGC ATATCGTTGG CTCGCATAGA TTTTGCACCC AAGGGTTTGA ACCCTCCCCA CACTCACCCT CGAGGAACAG
AGATTCTTGT AGTCTTGGAA GGTACCCTTT ACGTTGGCTT TGTCGCGTCC AACCAGAACG ACAACAGGTT ATTCACCAAA
GTGTTGAACA AAGGTGATGT GTTTGTTTTT CCCATCGGTC TGATTCACTT CCAGCAAAAC GTTGGTTATG GAAATGCTGT
GGCCATTGCT GCTCTTAGTA GCCAAAACCC GGGTGTTATC ACTATTGCAA ATGCTGTCTT TGGATCTAAA CCTCCCATCT
CCGATGATGT TCTCGCCAAA GCTTTTCAAG TTGACGTAAA GATTATCGAC TACCTTCAGA GGCAATTCTG GTACAACAAT
AGCTAGAGTG TGGGAAAATG AACCACTATC GTTATCTTAC CTTCCTCGGA CCTTACATAA ATGATTTTCT AAATGTGTAG
CTTTTCATGC AAAAGTCTCT CAATCAGTTA CAACAGTATT AAATAAAATG CATGTAGCTA TATATTATGT CTGTAACAAA
GCTGTTTTGT GTGCATTTCA ACCTTAATAC ACCAATAAAA GACGGTAACG ACGCTGCTCT TCTTTATTTT TAACACTTTA
TGAAAGTTTA TTCATAAATA AAAAATGAGG GTTTTGAACT GAAAAA

[show][hide][copy]CDS

>Vigan.08G156000.01
ATGAAGGTTG TTCAGTTCCT TGTAGTTCTA TTGGCTTTGG CATCCTCCGT TGCCTTTGCT TATGATCCAA GCCCTCTGCA
AGACTTCTGT GTGGCTATCA ATGATACCAA AACCGGTGGT ATATATGGCG TGTTCGTGAA TGGAAAATTT TGCAAGGATC
CAAAGCTTGC TAATGCTGAC GATTTCTTCT ATCGTGGGTT GGGAGCCGGT GACACTGCTA ACCCGTTAGG TTCAAAGGTG
ACAGCAGTGA CTGTTAATGA AATATTAGGT TTGAACACAC TTGGCATATC GTTGGCTCGC ATAGATTTTG CACCCAAGGG
TTTGAACCCT CCCCACACTC ACCCTCGAGG AACAGAGATT CTTGTAGTCT TGGAAGGTAC CCTTTACGTT GGCTTTGTCG
CGTCCAACCA GAACGACAAC AGGTTATTCA CCAAAGTGTT GAACAAAGGT GATGTGTTTG TTTTTCCCAT CGGTCTGATT
CACTTCCAGC AAAACGTTGG TTATGGAAAT GCTGTGGCCA TTGCTGCTCT TAGTAGCCAA AACCCGGGTG TTATCACTAT
TGCAAATGCT GTCTTTGGAT CTAAACCTCC CATCTCCGAT GATGTTCTCG CCAAAGCTTT TCAAGTTGAC GTAAAGATTA
TCGACTACCT TCAGAGGCAA TTCTGGTACA ACAATAGCTA G

[show][hide][copy]PROTEIN

>Vigan.08G156000.01
MKVVQFLVVL LALASSVAFA YDPSPLQDFC VAINDTKTGG IYGVFVNGKF CKDPKLANAD DFFYRGLGAG DTANPLGSKV
TAVTVNEILG LNTLGISLAR IDFAPKGLNP PHTHPRGTEI LVVLEGTLYV GFVASNQNDN RLFTKVLNKG DVFVFPIGLI
HFQQNVGYGN AVAIAALSSQ NPGVITIANA VFGSKPPISD DVLAKAFQVD VKIIDYLQRQ FWYNNS*