GBrowse Details

Vigan.08G157100.01

Basic Information:
Name: Vigan.08G157100.01
Multiple alignment
Variant Information
Position: Chr08:13973309..13976035 (- strand)
Length: 2727
Functional Information:
Description: Similar to Ammonium transporter. [G7I667, Medicago truncatula]
GO: Cellular Component: exosome (RNase complex) (GO:0000178)
Molecular Function: RNA binding (GO:0003723)
InterPro: Nucleic acid-binding, OB-fold (IPR012340)
Exosome complex component CSL4 (IPR019495)
Exosome complex component, N-terminal domain (IPR025721)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.08,37.64,12.60,14.38,24.43,17.70,18.30,15.60
Arabidopsis thaliana homolog: AT5G38890.1
Automatic updates:
Name: BT093063 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16M6 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255945 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max exosome complex component CSL4-like (LOC100796154), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:13973309..13973839 (- strand)
Length: 531
Type: three_prime_UTR
Position: Chr08:13973840..13973931 (- strand)
Length: 92
Type: CDS
Position: Chr08:13974864..13974945 (- strand)
Length: 82
Type: CDS
Position: Chr08:13975058..13975142 (- strand)
Length: 85
Type: CDS
Position: Chr08:13975382..13975470 (- strand)
Length: 89
Type: CDS
Position: Chr08:13975561..13975635 (- strand)
Length: 75
Type: CDS
Position: Chr08:13975781..13975951 (- strand)
Length: 171
Type: CDS
Position: Chr08:13975952..13976035 (- strand)
Length: 84
Type: five_prime_UTR


>Vigan.08G157100.01
TTATTTTTGT TAGAGGGCCG GTTCAAGAAG CGGTGAATTT GTAGCGGCTA GGCCCAAAAC TAAGTGGAAG GGTTGGGAGC
CGCGATGGAA GAAGAGAAAG AAGCACCGAT GGTAACACCG GGAGAAGTGT TGGGAAGAAG CAGCGATGTC AAAGCTGGGA
GAGGAGCATA CGCAGCGCCT CACAACAACA CCGTTTACGC CTCCCTAACC GGCTTCCACC GTACCATTCC TCCGCCGCCG
GACTCTCCTG ACAAGAGGCC GACTGTTGAA GTAACTGGTC ACAAGGCGCA TGGACCTGTT CCACAACCTG GATCTGTTGT
CATTGTGCGG GTCACCAAAG TAATGGCGCG GTCCGCTTCT GCTGATATTA TGTGTGTTGG ATCTAAGTGT GTTCGAGAAA
AATTTACCGG CATTATCAGA CAGCAAGATG TTAGAGCTAC TGAAATTGAT AAAGTAGACA TGCACCTGTC TTTTCATCCC
GGTGATATTG TTAAAGCTCT TGTGCTTTCT CTTGGAGATG CACGGGCCTA CTTTCTGTCT ACTGCAAAGA ATGAACTTGG
TGTTGTTTCT GCTGAAAGCA TTGCTGGTGC AACCATGGTT CCAGTAAGTT GGACTGAGAT GCAGTGCCCT GTAACTGGAC
AAATTGAGCA AAGAAAGGTT GCAAAGGCTG CAAGCTGACT AGAACACTTC ATCAAGCAGG AATTTGTTCT CTGTTTTGTA
GAAATGTACT AACATGCATT GGTGTTAGGG TGAAAAATTA TATATACGTG AACAGTTTTA TTTTTAGACA TACAGGAATG
CAAGCTTGTA GTTTACTTTG CAAGTTGGTC TACTTCTAAA ATAGCGAAAA CGCGAGATTT TCATTCACTC GTGTTGTGAG
CTGGACTTTG TTTCATTGTA AGACATACTT TAATTTTCAA ACTGGGAGGG AACTGGAGTC ACATTAGATT AGTTAGACTA
GTACTTAAAT TACAGTTTTT TAGTTAAATG TTGTTGTGTT GCATATGGGC TTCTTTAAGT GTCAAGAAAT CGGGCCTTGT
TTGTTGGATT GCTGCTACTT CTTGTACATT GTCCTCTTTT TTCCCTATCT TTTGCAAGTA ATGTATGATC TAGTCTTCCA
CCGTAAACCA TTTCCCTTCT CCCTATCCCA TGTCTGTAGG TCTATCAGGA CATTGTTTGA AAGAATAATA GGATCATATT
TTTCTAGCA

>Vigan.08G157100.01
ATGGAAGAAG AGAAAGAAGC ACCGATGGTA ACACCGGGAG AAGTGTTGGG AAGAAGCAGC GATGTCAAAG CTGGGAGAGG
AGCATACGCA GCGCCTCACA ACAACACCGT TTACGCCTCC CTAACCGGCT TCCACCGTAC CATTCCTCCG CCGCCGGACT
CTCCTGACAA GAGGCCGACT GTTGAAGTAA CTGGTCACAA GGCGCATGGA CCTGTTCCAC AACCTGGATC TGTTGTCATT
GTGCGGGTCA CCAAAGTAAT GGCGCGGTCC GCTTCTGCTG ATATTATGTG TGTTGGATCT AAGTGTGTTC GAGAAAAATT
TACCGGCATT ATCAGACAGC AAGATGTTAG AGCTACTGAA ATTGATAAAG TAGACATGCA CCTGTCTTTT CATCCCGGTG
ATATTGTTAA AGCTCTTGTG CTTTCTCTTG GAGATGCACG GGCCTACTTT CTGTCTACTG CAAAGAATGA ACTTGGTGTT
GTTTCTGCTG AAAGCATTGC TGGTGCAACC ATGGTTCCAG TAAGTTGGAC TGAGATGCAG TGCCCTGTAA CTGGACAAAT
TGAGCAAAGA AAGGTTGCAA AGGCTGCAAG CTGA

>Vigan.08G157100.01
MEEEKEAPMV TPGEVLGRSS DVKAGRGAYA APHNNTVYAS LTGFHRTIPP PPDSPDKRPT VEVTGHKAHG PVPQPGSVVI
VRVTKVMARS ASADIMCVGS KCVREKFTGI IRQQDVRATE IDKVDMHLSF HPGDIVKALV LSLGDARAYF LSTAKNELGV
VSAESIAGAT MVPVSWTEMQ CPVTGQIEQR KVAKAAS*