GBrowse Details

Vigan.08G157500.01

Basic Information:
Name: Vigan.08G157500.01
Multiple alignment
Variant Information
Position: Chr08:14026626..14030058 (+ strand)
Length: 3433
Functional Information:
Description: Similar to proteoglycan 4. [XP_008388705.1, Malus domestica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.17,25.43,17.87,19.55,25.32,13.88,22.99,18.12
Arabidopsis thaliana homolog: AT3G04560.1
Structure :
Position: Chr08:14026626..14026725 (+ strand)
Length: 100
Type: five_prime_UTR
Position: Chr08:14026726..14026921 (+ strand)
Length: 196
Type: CDS
Position: Chr08:14027729..14028018 (+ strand)
Length: 290
Type: CDS
Position: Chr08:14028128..14028217 (+ strand)
Length: 90
Type: CDS
Position: Chr08:14029046..14029395 (+ strand)
Length: 350
Type: CDS
Position: Chr08:14029474..14029738 (+ strand)
Length: 265
Type: CDS
Position: Chr08:14029739..14030058 (+ strand)
Length: 320
Type: three_prime_UTR


>Vigan.08G157500.01
TACATTAATC TTACAAGGAT TTGAAGAAGC GTCTTAATAT TTTTTAGTCG CTGAAAGGAA GAGTTTTTGA AGGAGAAGGA
GAGCAAAAAG AGAGATTGTG ATGGCAGACG ATCTGTTTGA AGGATTGCCA CCTCCTTCAT CCAACACTGT TCCTCAACAT
CATCAACCTC AACCAGAACC AATTGCTGTT GCTACCAACA ACGATGACAA GACGGAATCC TCTGCAGTTC CGCCTCCAAA
GCCCATCCTC AAAAGTGCCC TCAAGCGTCC CAACCCTACT GAACCCGACA CCCAAGCTGC AGCGCCTAAG AAAAGCTTGA
AATTCAAAAC CATGACGGAT GCTTCTGAAG CTCAAGTTAT TGATGCCATG CAGAAGATAT CTTCGCACAT CAAGAACCCT
TCAAAATTTA GCAAGGCTGC AAAGCTTGCT GTACAGCTCA TTCAGGCAGG AAGTGTAAAG TCAGAAATTA GTGATTATTT
TTTTGCTATA TTAGAAGCTG CAATGTCATC ATCCATAACT TGTTCAGATC CTTCAGTTCG AGCAGATTAC CATTGTCTAT
TCTCAGCAGC TCAAAACGCC AAAGAACACC TCAATAAGAA GCAAAAGAAT CAACTGGAAA CATGGACAAT TAATGCTGTG
GTGGCAAATG ATTTATACAC AGATGACAGC TTTGTGTTTT CTAAAGCAGC TGGGAAAATC AAGGAAATTA TATCTAGTCT
TCCTGTTGCA ACAGAGCAGG AGGATGCAGA GGAAGAAAAG TCTCTGAAAG ATGGCACAGT TATAGCAGAT GAAGGGGGTA
AAACACCTGC CACGGATAAT GATAATGATG GGAAGGAAGC TGACCCATTT GGACTTGATG CTCTGATTCC TAATTCCACA
AAGAAAGTTG AAAAACTAAA GGCAAAGAAT GAGGCAACTG TGGAAATAAG GGAGGATGAG GAAGAAACCA AGAGATTCCT
CAAGTCACAA AGAGAAGCCT TGATAACTTG TTTAGAGATT GCTGCCCGGC GTTATAAGAC ACCCTGGTGT CAAACCGTGA
TTGATATTTT GGTGAAACAT GCCTCTGATA ATGTGTCGAG ATTTACAGCT AGTCAGAGGG ATGCCGTTGG GAAATTGTGG
GCTTCAATAC GGGAACAACA AACTCGTAGG AAGCAAGGGA AGTCAGTTAA TGGAAAACTT GATGTAAATG CTTTTGAATG
GCTTCAACAA AAATATGCTA ATGAAAAGAT TAGCATTAGG CATTCTGTTG GAGCTAGCGG AGACCGTCGA GCCCAACAAT
GGCTTGGTTA AATATTCTTT TGAGGTCAAT GAAAATGATA AGGATGATGA TCACTGTAAA ACTGTTCAAA GAGTGAAAGA
GGATGCGTCC TCGCGAGTTC ATTGAGTGTT GTAACATTAG TAGCTCTCGG ACATGTCTCC GGACTGTGAT TTCTTCAGAA
AACAATTTGG TAGTAACGTA TAAAATGTGA TTTCTTTATA CCCTTTTTAT TTGTGCTGAT ATAAGCCAGT TATTTGTTTC
AAAACATGCA TAGTCTGCCC AGGCATCTAT CTACATCAAT TTACTCAAAC GATTCGAATG GACTTTGATC CCGAAATAGT
GTTTGTTGAT A

>Vigan.08G157500.01
ATGGCAGACG ATCTGTTTGA AGGATTGCCA CCTCCTTCAT CCAACACTGT TCCTCAACAT CATCAACCTC AACCAGAACC
AATTGCTGTT GCTACCAACA ACGATGACAA GACGGAATCC TCTGCAGTTC CGCCTCCAAA GCCCATCCTC AAAAGTGCCC
TCAAGCGTCC CAACCCTACT GAACCCGACA CCCAAGCTGC AGCGCCTAAG AAAAGCTTGA AATTCAAAAC CATGACGGAT
GCTTCTGAAG CTCAAGTTAT TGATGCCATG CAGAAGATAT CTTCGCACAT CAAGAACCCT TCAAAATTTA GCAAGGCTGC
AAAGCTTGCT GTACAGCTCA TTCAGGCAGG AAGTGTAAAG TCAGAAATTA GTGATTATTT TTTTGCTATA TTAGAAGCTG
CAATGTCATC ATCCATAACT TGTTCAGATC CTTCAGTTCG AGCAGATTAC CATTGTCTAT TCTCAGCAGC TCAAAACGCC
AAAGAACACC TCAATAAGAA GCAAAAGAAT CAACTGGAAA CATGGACAAT TAATGCTGTG GTGGCAAATG ATTTATACAC
AGATGACAGC TTTGTGTTTT CTAAAGCAGC TGGGAAAATC AAGGAAATTA TATCTAGTCT TCCTGTTGCA ACAGAGCAGG
AGGATGCAGA GGAAGAAAAG TCTCTGAAAG ATGGCACAGT TATAGCAGAT GAAGGGGGTA AAACACCTGC CACGGATAAT
GATAATGATG GGAAGGAAGC TGACCCATTT GGACTTGATG CTCTGATTCC TAATTCCACA AAGAAAGTTG AAAAACTAAA
GGCAAAGAAT GAGGCAACTG TGGAAATAAG GGAGGATGAG GAAGAAACCA AGAGATTCCT CAAGTCACAA AGAGAAGCCT
TGATAACTTG TTTAGAGATT GCTGCCCGGC GTTATAAGAC ACCCTGGTGT CAAACCGTGA TTGATATTTT GGTGAAACAT
GCCTCTGATA ATGTGTCGAG ATTTACAGCT AGTCAGAGGG ATGCCGTTGG GAAATTGTGG GCTTCAATAC GGGAACAACA
AACTCGTAGG AAGCAAGGGA AGTCAGTTAA TGGAAAACTT GATGTAAATG CTTTTGAATG GCTTCAACAA AAATATGCTA
ATGAAAAGAT TAGCATTAGG CATTCTGTTG GAGCTAGCGG AGACCGTCGA GCCCAACAAT GGCTTGGTTA A

>Vigan.08G157500.01
MADDLFEGLP PPSSNTVPQH HQPQPEPIAV ATNNDDKTES SAVPPPKPIL KSALKRPNPT EPDTQAAAPK KSLKFKTMTD
ASEAQVIDAM QKISSHIKNP SKFSKAAKLA VQLIQAGSVK SEISDYFFAI LEAAMSSSIT CSDPSVRADY HCLFSAAQNA
KEHLNKKQKN QLETWTINAV VANDLYTDDS FVFSKAAGKI KEIISSLPVA TEQEDAEEEK SLKDGTVIAD EGGKTPATDN
DNDGKEADPF GLDALIPNST KKVEKLKAKN EATVEIREDE EETKRFLKSQ REALITCLEI AARRYKTPWC QTVIDILVKH
ASDNVSRFTA SQRDAVGKLW ASIREQQTRR KQGKSVNGKL DVNAFEWLQQ KYANEKISIR HSVGASGDRR AQQWLG*