GBrowse Details

Vigan.08G160500.01

Basic Information:
Name: Vigan.08G160500.01
Multiple alignment
Variant Information
Position: Chr08:14332066..14335452 (- strand)
Length: 3387
Functional Information:
Description: Similar to Uncharacterized protein. [I1LBN5, Glycine max]
InterPro: SS18 family (IPR007726)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.03,41.27,19.10,3.86,59.45,105.03,11.31,7.49
Automatic updates:
Name: NM_001289286 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GRF1-interacting factor 1-like (LOC100812917), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:14332066..14332413 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr08:14332414..14332806 (- strand)
Length: 393
Type: CDS
Position: Chr08:14332954..14333038 (- strand)
Length: 85
Type: CDS
Position: Chr08:14333853..14333929 (- strand)
Length: 77
Type: CDS
Position: Chr08:14334924..14335004 (- strand)
Length: 81
Type: CDS
Position: Chr08:14335005..14335452 (- strand)
Length: 448
Type: five_prime_UTR


>Vigan.08G160500.01
GACTCTGTTT AGTTGCGAAC AGCAGCATCT TTTATTTTCT CTCTCTGGTC CATCACGTGA GCTACTTTTT GAGAGAGAGA
GAGAGAGAGA GAAGAGAGCA AAGACACGCA GTTCCAGAGA GGGACCCTGT TGCAGAGAAG AAAGAGCCAA ATCAACCAGG
TTCCCTCAAC CTCAACTCTC TCTCTTGCAA TAAATAATAA TATCTTTCTC GGTGTGGTAG CAACATTGTA AATGTAATTG
TAATTGTAAT TGCAAGTGAG AGAGAAGGCA AAAGCGGGAA CAGAGAAAAA CACAGTCTTT TGTTTCTCTT TGCAGTTCCT
TCCTCCTTGC ACTCTCAGCT TGCAGGGGTT GTTTCCCCCT TCCGTTTGAG AGAAAAAAAG AGAGAGAATA GATTTCAATT
TCATCATCTG TATATAAATA GTGGACTTAG TTACTTAGCG TGCGAGAAAT GCAGCAGCAC CTGATGCAGA TGCAGCCCAT
CATGGCAGCC TACTACCCCA ACAACGTCAC CACTGATCAC ATTCAACAGT ATCTGGATGA AAACAAGTCC CTGATTCTGA
AGATTGTTGA AAGCCAGAAT TCTGGCAAGC TGAGCGAGTG TGCCGAGAAC CAATCCAGGC TGCAGAGAAA TCTGATGTAC
CTTGCTGCGA TAGCTGATTC CCAGCCCCAA CCACCTCCTA TGCCTGGTCA GTATCCTCCC AGTGGAATTA TGCAGCAGGG
AGCACACTAC ATGCAGGCTC AACAAGCTCA GCAGATGTCA CAACAACAGC TAATGGCTTC ACGCTCCTCC CTCTTATACT
CTCAACAACC CTTCTCAGCT CTTCAACAGC AGCAGGGCTT GCACAGCCAA CTTGGCATGA GCTCCAGCGG AAGTCAAGGC
TTTCACATGA TGCAAAGTGA AGCCACAACT GTAGGGGGCA ATGCAACCAT AGGTTCTGGA GGGTTTCCTG ATTTTGTACG
CATTGGTAAC ATTGGCAAGC AAGATATTGG AAGCTCTGGT GAAGGCAGAG GAGGAAGCTC CAGTGGCCAC TCTGGTGATG
GTGGTGAGAC CCTTTATCTG AAATCTGCAG CTGATGGAAA CTAAACCAGC CAGGGAGAAT ACTGAAGTTT CCTTGGCCTT
TAGTGGTTTA TTTAGTTAGG AGAATTAGGC AGTGGACATT AAGTAGAGGA AGAAGAAAGG AAAAACTTGC TGCACTTGTT
GCTTATATAT GTTGTTTGTT TATCTTGTGC TAAAGGCAAA CAATCTAATC ACTGCCTTAA TGTTTCTGCA GTAGTACTAG
TAGTAACATG ATGCATGCTT TATTTTCTGG TGTAAAGCTT TAGTCATAAA TGTCAAGGTC ACAATATGAC CACTTGTTAT
CGTGAGGGTT ATTTGGTTGA ACCATGACTG ATGAAAATTT TCCGACAAAG TTAACTCAGA ATCCAAACCC AC

>Vigan.08G160500.01
ATGCAGCAGC ACCTGATGCA GATGCAGCCC ATCATGGCAG CCTACTACCC CAACAACGTC ACCACTGATC ACATTCAACA
GTATCTGGAT GAAAACAAGT CCCTGATTCT GAAGATTGTT GAAAGCCAGA ATTCTGGCAA GCTGAGCGAG TGTGCCGAGA
ACCAATCCAG GCTGCAGAGA AATCTGATGT ACCTTGCTGC GATAGCTGAT TCCCAGCCCC AACCACCTCC TATGCCTGGT
CAGTATCCTC CCAGTGGAAT TATGCAGCAG GGAGCACACT ACATGCAGGC TCAACAAGCT CAGCAGATGT CACAACAACA
GCTAATGGCT TCACGCTCCT CCCTCTTATA CTCTCAACAA CCCTTCTCAG CTCTTCAACA GCAGCAGGGC TTGCACAGCC
AACTTGGCAT GAGCTCCAGC GGAAGTCAAG GCTTTCACAT GATGCAAAGT GAAGCCACAA CTGTAGGGGG CAATGCAACC
ATAGGTTCTG GAGGGTTTCC TGATTTTGTA CGCATTGGTA ACATTGGCAA GCAAGATATT GGAAGCTCTG GTGAAGGCAG
AGGAGGAAGC TCCAGTGGCC ACTCTGGTGA TGGTGGTGAG ACCCTTTATC TGAAATCTGC AGCTGATGGA AACTAA

>Vigan.08G160500.01
MQQHLMQMQP IMAAYYPNNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQSRLQR NLMYLAAIAD SQPQPPPMPG
QYPPSGIMQQ GAHYMQAQQA QQMSQQQLMA SRSSLLYSQQ PFSALQQQQG LHSQLGMSSS GSQGFHMMQS EATTVGGNAT
IGSGGFPDFV RIGNIGKQDI GSSGEGRGGS SSGHSGDGGE TLYLKSAADG N*