GBrowse Details

Vigan.08G161800.01

Basic Information:
Name: Vigan.08G161800.01
Multiple alignment
Variant Information
Position: Chr08:14460763..14466340 (- strand)
Length: 5578
Functional Information:
Description: Similar to Uncharacterized protein. [I1LBM4, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, RING-type, conserved site (IPR017907)
Zinc finger, C3HC4 RING-type (IPR018957)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.88,7.10,5.06,7.82,10.49,6.63,9.60,6.97
Automatic updates:
Name: NM_001401259 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC124174248 (LOC124174248), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001401260 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC124174248 (LOC124174248), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:14460763..14461103 (- strand)
Length: 341
Type: three_prime_UTR
Position: Chr08:14461104..14461277 (- strand)
Length: 174
Type: CDS
Position: Chr08:14462019..14462091 (- strand)
Length: 73
Type: CDS
Position: Chr08:14462966..14463016 (- strand)
Length: 51
Type: CDS
Position: Chr08:14463101..14463603 (- strand)
Length: 503
Type: CDS
Position: Chr08:14463832..14464111 (- strand)
Length: 280
Type: CDS
Position: Chr08:14464903..14465002 (- strand)
Length: 100
Type: CDS
Position: Chr08:14465640..14465757 (- strand)
Length: 118
Type: CDS
Position: Chr08:14465758..14466340 (- strand)
Length: 583
Type: five_prime_UTR


>Vigan.08G161800.01
AAAAACATAA AAAGTTTTGT AGTGTGTTAG GGTGATGTTG GTAACAGAAT ATTTTGCTAT TTTGGGGGAA AATGGTAACT
AGAAAGGAAG AAGATAGAAT GAAAAAAACG AAGGAGGTTT GGATAAACAG TTAAGGAACA GTGATACATG GTATTACCAA
AGTAAACAGT AATAATCTGG GAGAGTTGAA GTCAAATATG TGAATGACAC ACAAACACAC GCACGGAACA AGAAGCGTTG
GTTTGTTAGT AGTGTGTGTG TGTGTATGGC GTGTGTATTG CTTCGCTTCT CCTTCTCTTT CTCTTCATGC TCTCTTTTCT
TTGTCTCGGT CTAACACCAA CAACACCCAA ACCCAACAAC GACAACAACA TTGGACGGTG CCCGGTCTAT CTTTACGTAG
TTTTTCTGCC AACAATCGAA CCCCATCTGG GGATTTGCCC CCAAAAGCCG CCACCTGAAT TCCCTCCCCA GATCCATATC
GGTTCTACGT CGAATCCAAC AGGGATAGAA CCACCGTGGT GTGCTGTGGT TCACTTGGCA GGATTGGAAT GCAAAGTTAA
TTAATTTATT CGTTATCGTA GCGATGGTGT CGAGCCAGGT GGTGAAAGTG AAGAGAGATA CGCTACGACC ATGCATGACA
TGCCCTCTCT GCCATAACTT CTACAAAGAT GCCACCACCA TCTCTCTCTG CCTTCACACC TTTTGCAGGA AGTGCATATA
TGATAAACTA TCGGATGAGG AGATGGATTG CTGTCCTGTG TGCAAGATTG ATTTAGGCTG CCTTCCGGTT GAAAAGCTCA
GGCCAGACCA TAATTTGCAA GATATAAGGG CAAAAGTATT CCCGTTTAAG AGAAAAAAGA TCAAGGCCCA GGAAGTTTTG
TCTTCAATAT CATTGCCAAC CAAAAGGAAA GAAAGATCAC TTTCATCATT GGTAGTCAGT GCCCCCAAAG TTTCAATGCA
ACCCGGCTTT ACAGGAAAGA GAACTAAAAC CAGTACAAGA AAGGCTGCTG CTGCTTTACG TGGATGCGGT TTTCTTCTTG
AATCCATAAA GAAGGAAGAA ACAAACGGTG AAGATAATAC GGATCCTTCA ATGGCCGAGC CTTCTAAAAA GCATAAGCCT
AATGCAGATA AAGAGAACAG TGTGGAACAT GCAGAAGGGA AGGTTGATCT CTGGACACCC CTGAACTGTC TTGTTGAAGC
TGCCAACCGA ACAAAGTCCT CCAGGTCAAA TTCACAAGCA ATTCCTCTTG CCAAATTAGA GTCCCCGGTT ACTCCTCATG
GTGGACAAAA TATACCTGAA ATTACAACCA AAACAGAGCT ACCAGCTTCT GTCCACAGTG AACTAAACAT TCCAAAATCC
AAAAATAAGT ATACTGGACA CAAAACAATA TTTGGGGATG ACAAGGATGC AAACAACTTG CCTTCAGGAC CAGTGAAGAG
AAGAAGGTTG CGTCCTGCTG GTCAGAAAAG AGTTGCAGCA TCTGAGATGT CTTCCTCATC CCCAGCACCA CTAAATGCAA
CAGGGAGCAA GTGCAACAGA AAAAATAGTC CTATCTGGTT TTCATTAGTT GCTTCAGAGG ACCAGAAAGG AGATATTCCC
TTGCCACAGA TCTCAGCATG TTATTTAAGA ATAAAGGATG GTACTGTGCC CGTCTCATTT ATTCAAAAGT ACCTCGTGAA
GAAACTTAAT CTTTCCAGTG AAGCAGAGGT GGAAATAATG TGCCGGGGTC AAGCAGTGCT TCCATCATTA CAACTGCATA
ATTTAGTAGA TCTATGGTTC CGGACAGCCT CAACCTCGAA AAGGATACCA ACATCAGTGG GGTCCTCAGC CAAAGATTTT
GTGATGGTTT TATCGTATTG TCGAAAGACA TTGCCCCCTT GAACATGTTC CCTGTTCTAT CTATATACAT TTTCCCCCTA
TACTTTACAT ACACATTCAA CTGTTTTGAT ACCATTCTCA CCGACATTAC TGCCTAGAGA TTTGTTCATT TAGACGAGGA
ATATGTATGA TTTTGTTTTG CTAGTGACTG AGTATGTGCA ACCACCAATT TCATTACTTC TGTTCCATTT GCTGTTAGCT
GTTATTCTTT GGATCATGGA ACATTTTGTC AAATCATGTC TTCCCCCTTG TAAGAATCGA ACGAGACTTC AACTACGTTA
GTGTTTTTAA CATTATGCAT TTAAGTTCTA TGGTTCTGAG AATGGAAAGC AACTCAAGGA TTT

>Vigan.08G161800.01
ATGGTGTCGA GCCAGGTGGT GAAAGTGAAG AGAGATACGC TACGACCATG CATGACATGC CCTCTCTGCC ATAACTTCTA
CAAAGATGCC ACCACCATCT CTCTCTGCCT TCACACCTTT TGCAGGAAGT GCATATATGA TAAACTATCG GATGAGGAGA
TGGATTGCTG TCCTGTGTGC AAGATTGATT TAGGCTGCCT TCCGGTTGAA AAGCTCAGGC CAGACCATAA TTTGCAAGAT
ATAAGGGCAA AAGTATTCCC GTTTAAGAGA AAAAAGATCA AGGCCCAGGA AGTTTTGTCT TCAATATCAT TGCCAACCAA
AAGGAAAGAA AGATCACTTT CATCATTGGT AGTCAGTGCC CCCAAAGTTT CAATGCAACC CGGCTTTACA GGAAAGAGAA
CTAAAACCAG TACAAGAAAG GCTGCTGCTG CTTTACGTGG ATGCGGTTTT CTTCTTGAAT CCATAAAGAA GGAAGAAACA
AACGGTGAAG ATAATACGGA TCCTTCAATG GCCGAGCCTT CTAAAAAGCA TAAGCCTAAT GCAGATAAAG AGAACAGTGT
GGAACATGCA GAAGGGAAGG TTGATCTCTG GACACCCCTG AACTGTCTTG TTGAAGCTGC CAACCGAACA AAGTCCTCCA
GGTCAAATTC ACAAGCAATT CCTCTTGCCA AATTAGAGTC CCCGGTTACT CCTCATGGTG GACAAAATAT ACCTGAAATT
ACAACCAAAA CAGAGCTACC AGCTTCTGTC CACAGTGAAC TAAACATTCC AAAATCCAAA AATAAGTATA CTGGACACAA
AACAATATTT GGGGATGACA AGGATGCAAA CAACTTGCCT TCAGGACCAG TGAAGAGAAG AAGGTTGCGT CCTGCTGGTC
AGAAAAGAGT TGCAGCATCT GAGATGTCTT CCTCATCCCC AGCACCACTA AATGCAACAG GGAGCAAGTG CAACAGAAAA
AATAGTCCTA TCTGGTTTTC ATTAGTTGCT TCAGAGGACC AGAAAGGAGA TATTCCCTTG CCACAGATCT CAGCATGTTA
TTTAAGAATA AAGGATGGTA CTGTGCCCGT CTCATTTATT CAAAAGTACC TCGTGAAGAA ACTTAATCTT TCCAGTGAAG
CAGAGGTGGA AATAATGTGC CGGGGTCAAG CAGTGCTTCC ATCATTACAA CTGCATAATT TAGTAGATCT ATGGTTCCGG
ACAGCCTCAA CCTCGAAAAG GATACCAACA TCAGTGGGGT CCTCAGCCAA AGATTTTGTG ATGGTTTTAT CGTATTGTCG
AAAGACATTG CCCCCTTGA

>Vigan.08G161800.01
MVSSQVVKVK RDTLRPCMTC PLCHNFYKDA TTISLCLHTF CRKCIYDKLS DEEMDCCPVC KIDLGCLPVE KLRPDHNLQD
IRAKVFPFKR KKIKAQEVLS SISLPTKRKE RSLSSLVVSA PKVSMQPGFT GKRTKTSTRK AAAALRGCGF LLESIKKEET
NGEDNTDPSM AEPSKKHKPN ADKENSVEHA EGKVDLWTPL NCLVEAANRT KSSRSNSQAI PLAKLESPVT PHGGQNIPEI
TTKTELPASV HSELNIPKSK NKYTGHKTIF GDDKDANNLP SGPVKRRRLR PAGQKRVAAS EMSSSSPAPL NATGSKCNRK
NSPIWFSLVA SEDQKGDIPL PQISACYLRI KDGTVPVSFI QKYLVKKLNL SSEAEVEIMC RGQAVLPSLQ LHNLVDLWFR
TASTSKRIPT SVGSSAKDFV MVLSYCRKTL PP*