GBrowse Details

Vigan.08G162300.01

Basic Information:
Name: Vigan.08G162300.01
Multiple alignment
Variant Information
Position: Chr08:14509785..14516293 (- strand)
Length: 6509
Functional Information:
Description: Similar to Uncharacterized protein. [B2DBE7, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Basic leucine-zipper, C-terminal (IPR020983)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.73,20.01,10.97,11.26,11.37,13.35,16.74,11.51
Arabidopsis thaliana homolog: AT5G28770.2
Automatic updates:
Name: NM_001251024 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max bZIP protein (SBZ1), mRNA.
PubMed ID: 18365246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:14509785..14509956 (- strand)
Length: 172
Type: three_prime_UTR
Position: Chr08:14509957..14510352 (- strand)
Length: 396
Type: CDS
Position: Chr08:14510576..14510701 (- strand)
Length: 126
Type: CDS
Position: Chr08:14510825..14510900 (- strand)
Length: 76
Type: CDS
Position: Chr08:14513351..14513567 (- strand)
Length: 217
Type: CDS
Position: Chr08:14513863..14513959 (- strand)
Length: 97
Type: CDS
Position: Chr08:14515709..14516083 (- strand)
Length: 375
Type: CDS
Position: Chr08:14516084..14516293 (- strand)
Length: 210
Type: five_prime_UTR


>Vigan.08G162300.01
GGATGGGTTA TATAATATCA GTGGTTGATG ATAGGAGAGA AAAAAAATTG AAAAAGAAAA GAAAGAGAAA GATTGAATGT
CTTCCCCCAG TGGTGTACGA TTTTGACCTA TATGCCCCGG TGCTCTCGAT TTGTATAGCC GCGGCCTCCT CCCATCGCAT
CACATCACAC ACAATCAAAC CAAAGGAGAC GTAAAGACGT AAGATACGAT ATGGATAGGG TGTTCTCCTC AGTCGACGAA
ATCTCCGATC ACTTCTGGCC ATCGCCGCCG ATCCCCGTCT CCGCCGCCGA TGAGGCCTCT AAGATGAGCC GTAGCGCCTC
CGAGTGGGCC TTCCAACGCT TCATCCAGGA AGCTTCCGCA CCCTCTCCCC CCTCTCCTTC CTCCGCCACC ACGGCTACTT
CTGCGGCCGC CACTGACGTT GTCTTTGTCG AGATCGACGA TCATCCCAAA CCTGCCCCTG CTCCTCCCCA GAACGCCGCC
GTTTTGCCCA ATGCCCCTGT TCCCGTACCC CTTGACTCCG ATGAGTACCA GGCCTTCCTC AAGAGCAAGC TCAACCTTGC
ATGCGCTGCT GTTGCCATGA CTAGGGCATC TTTGGCTAAA TCTCAAGAGC CAGCCCCTTT TTCTGATGGT GGATCACAGC
CTATCGATCC TTCTCAAGTT GGATCTCAGA CTACATCTAA AGGATCTATT CCTTCTGGAA ATGATCCATC TAAGTTACAA
GATAAAGATA CGAAAGTACC AGTTGGGATG CCTTCCATAC CTTCCACGCA AAAGAAACCT GTTGTTGCAG TTAGACCATC
AACAAGTGGA TCATCAAGAG AACTGTCAGA TGATGATGAT GCTGAGGGAG AGACATCTAT GAACGACATG GACCCAGCTG
ATGCAAAAAG AGTAAGGAGG ATGCTATCCA ATAGGGAGTC TGCCCGGCGC TCTAGAAGAA GAAAGCAGGC TCATTTAACT
GACCTAGAAA CACAGGTTTC TCAATTAAGA GGTGAAAATT CTACCTTGTT GAAGCGCCTT ACTGATGTAA GTCAGAAATA
CAGTGAATCT GCTGTTGACA ACAGAGTTTT AAAAGCTGAT GTGGAAACAT TAAGAGCAAA GGTGAAGATG GCTGAAGAGA
CCGTCAAAAG AATTACCGGG TTGAATCCAA TGGTTCATGC CATGTCTGAC ATGTCACCAT TGGGCATGAC GTTATTTGAT
GGAAGAAGCC CTTCAGACAC TTCAGCAGAT GCAGCTGTTC CTGTGCAAGA TGATCATCAT CACTTCTATC AACCCACATC
TAATAATCCT ATTCCCAGTC ATGATCCGAT AGTCAACGAT GGGTTGGCGG GCATGTCTTC AATTGAAAAT GTGCAGCAGA
ACCCTGCAGC AGTGGCAGGT GGGAACAAGA TGGGTCAAAC TTCTTCCCTG CAGCGGGTAG CTAGCTTGGA ACATCTTCAG
AAGCGGATTC GTGGTGGTGT GGATTCCTGT GGACCTCCCT CTAATGGGGA GCAGTAAGTA GCCAAATCTC TTGGATGCTT
CACCAGAAAG TTATTATCAA ACAGTTATTT CTGCTAGTTA TTTATAACTA AAGCCATATT CATCTGGAAT ACACTGTACA
TCAATTTGAT GGATCACATG AGTCTGGATT CAATTAGTGC ACTTCGCCTC TTGTTCTTTT CCAAAAAAA

>Vigan.08G162300.01
ATGGATAGGG TGTTCTCCTC AGTCGACGAA ATCTCCGATC ACTTCTGGCC ATCGCCGCCG ATCCCCGTCT CCGCCGCCGA
TGAGGCCTCT AAGATGAGCC GTAGCGCCTC CGAGTGGGCC TTCCAACGCT TCATCCAGGA AGCTTCCGCA CCCTCTCCCC
CCTCTCCTTC CTCCGCCACC ACGGCTACTT CTGCGGCCGC CACTGACGTT GTCTTTGTCG AGATCGACGA TCATCCCAAA
CCTGCCCCTG CTCCTCCCCA GAACGCCGCC GTTTTGCCCA ATGCCCCTGT TCCCGTACCC CTTGACTCCG ATGAGTACCA
GGCCTTCCTC AAGAGCAAGC TCAACCTTGC ATGCGCTGCT GTTGCCATGA CTAGGGCATC TTTGGCTAAA TCTCAAGAGC
CAGCCCCTTT TTCTGATGGT GGATCACAGC CTATCGATCC TTCTCAAGTT GGATCTCAGA CTACATCTAA AGGATCTATT
CCTTCTGGAA ATGATCCATC TAAGTTACAA GATAAAGATA CGAAAGTACC AGTTGGGATG CCTTCCATAC CTTCCACGCA
AAAGAAACCT GTTGTTGCAG TTAGACCATC AACAAGTGGA TCATCAAGAG AACTGTCAGA TGATGATGAT GCTGAGGGAG
AGACATCTAT GAACGACATG GACCCAGCTG ATGCAAAAAG AGTAAGGAGG ATGCTATCCA ATAGGGAGTC TGCCCGGCGC
TCTAGAAGAA GAAAGCAGGC TCATTTAACT GACCTAGAAA CACAGGTTTC TCAATTAAGA GGTGAAAATT CTACCTTGTT
GAAGCGCCTT ACTGATGTAA GTCAGAAATA CAGTGAATCT GCTGTTGACA ACAGAGTTTT AAAAGCTGAT GTGGAAACAT
TAAGAGCAAA GGTGAAGATG GCTGAAGAGA CCGTCAAAAG AATTACCGGG TTGAATCCAA TGGTTCATGC CATGTCTGAC
ATGTCACCAT TGGGCATGAC GTTATTTGAT GGAAGAAGCC CTTCAGACAC TTCAGCAGAT GCAGCTGTTC CTGTGCAAGA
TGATCATCAT CACTTCTATC AACCCACATC TAATAATCCT ATTCCCAGTC ATGATCCGAT AGTCAACGAT GGGTTGGCGG
GCATGTCTTC AATTGAAAAT GTGCAGCAGA ACCCTGCAGC AGTGGCAGGT GGGAACAAGA TGGGTCAAAC TTCTTCCCTG
CAGCGGGTAG CTAGCTTGGA ACATCTTCAG AAGCGGATTC GTGGTGGTGT GGATTCCTGT GGACCTCCCT CTAATGGGGA
GCAGTAA

>Vigan.08G162300.01
MDRVFSSVDE ISDHFWPSPP IPVSAADEAS KMSRSASEWA FQRFIQEASA PSPPSPSSAT TATSAAATDV VFVEIDDHPK
PAPAPPQNAA VLPNAPVPVP LDSDEYQAFL KSKLNLACAA VAMTRASLAK SQEPAPFSDG GSQPIDPSQV GSQTTSKGSI
PSGNDPSKLQ DKDTKVPVGM PSIPSTQKKP VVAVRPSTSG SSRELSDDDD AEGETSMNDM DPADAKRVRR MLSNRESARR
SRRRKQAHLT DLETQVSQLR GENSTLLKRL TDVSQKYSES AVDNRVLKAD VETLRAKVKM AEETVKRITG LNPMVHAMSD
MSPLGMTLFD GRSPSDTSAD AAVPVQDDHH HFYQPTSNNP IPSHDPIVND GLAGMSSIEN VQQNPAAVAG GNKMGQTSSL
QRVASLEHLQ KRIRGGVDSC GPPSNGEQ*