GBrowse Details

Vigan.08G162400.01

Basic Information:
Name: Vigan.08G162400.01
Multiple alignment
Variant Information
Position: Chr08:14524910..14528662 (+ strand)
Length: 3753
Functional Information:
Description: Similar to Uncharacterized protein. [I1NIP8, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:159.38,68.70,58.45,46.83,128.15,231.92,64.93,45.03
Arabidopsis thaliana homolog: AT5G28840.1
Automatic updates:
Name: NM_001255835 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDP-mannose 3,5-epimerase-like (LOC100780764), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:14524910..14526026 (+ strand)
Length: 1117
Type: five_prime_UTR
Position: Chr08:14526027..14526436 (+ strand)
Length: 410
Type: CDS
Position: Chr08:14526553..14526646 (+ strand)
Length: 94
Type: CDS
Position: Chr08:14526742..14526871 (+ strand)
Length: 130
Type: CDS
Position: Chr08:14527011..14527143 (+ strand)
Length: 133
Type: CDS
Position: Chr08:14527682..14527889 (+ strand)
Length: 208
Type: CDS
Position: Chr08:14528218..14528373 (+ strand)
Length: 156
Type: CDS
Position: Chr08:14528374..14528662 (+ strand)
Length: 289
Type: three_prime_UTR


>Vigan.08G162400.01
ATTTTGACGT ATCTACTGCA CTTATTCACC TTAAAACAGT TTCCTCTGTT GGGATGTGCA ACGTGTTAAA TGGGTCTGGT
ATACGACGTT TCTTTTCTCG CGACAGCTTC GGTGAAAGAT TCCCAGCACT AAATAATTTA GAACAGAGCT TAATTTGTTT
TATTAAAGCA CAGTACAATT GTTTGTGTCT GTATTGTGAG GAAATCAAAT AACACAAGTT ATGAGTGACT TTCTCTTTTC
ATCCTATATA TTGCATTCCA CCACTTTCAA CTCATTTCCT ATCTCCTTCT CTCCATAAAC TTTCTTCAAT CCCTTCAACC
TCTCCCTTTT CCCTCTACAC AGGTTTGTTC CTCAATTCCC CCATCATTTA TGTTTATCTT TCAAAATTTA CCATCCACTC
TTAGGGTTTA AACTTTCAAT CCAACTTTTG CCTTTTGCCT TTTGCCTTTT GCCGTGACTT CTCTATGGAC CAGTTCTCTC
ATTCTCTTCC TATCATTCCT TTTTCTTTTA CTGTCATCCA TTATATGTAA ACCTATTTTA TGCTTTGCCT CAATTTGATA
CTCTTCAACT CAACACGAAA CCTATTTTAC TGTCACCCAT TCTAATTTAT TTTTTCCCCT TTTCTTTTTG GGAAAGCTGG
GTATCAGATC TTTTTTAAAC CTAAATACTC CTATTTTTTT TTTAAGTTTT ATCTTTCAGT AGTGCCAACT ATAATGAGTT
AAGTGTTTTC GTTATGCTTC TATTAATTAA TCGCATTCTA GTACCCTTCA TGTGCTAGCA TGTGTTGTAT CTCGTTCTTT
TCCCCCGACT CTCCGCCGTG TTTTTCAGCC TGGTTTGTTA TTTCTTGAAA AGAGGAAATT TCGTCAATTT CACTTTTCTT
CTTCCTTCTT TCTCACATTA CCCTTGCTTC ACATGAACTG TTTTTTATTT ATAGACTGGT TTGTTATTCC TTGAAAAGAG
GAAATTTCGT AAATTTCATT TTTCTCTTCT TTCTTGGTTC TCACATTACC TTTGCTTCAC ATGAACTCTT TTTTGTTTAT
AAAGTGGTTG CTGATGTTTT GGACTTATTT TTCGTAACCG TTTTCCTTTT GCCCTCCGAA TCCACGTTGT GTGCAGAATG
GGAAGTGCTG GAAAAACTGA CTATGGTGAG TACACTTATG AGAGTCTTGA GAGAGAGCCT TACTGGCCCT CAGAGAAGCT
TAAGATTTCC ATCACTGGGG CTGGGGGTTT TATTGCATCA CACATAGCTC GGCGCCTCAA GACGGAGGGG CATTATGTTA
TTGCTTCTGA CTGGAAGAAA AATGAGCACA TGACTGAGGA CATGTTCTGT GATGAATTCC ATCTTGTTGA TCTCAGGGTC
ATGGATAACT GCCTGAAGGT TACTGAGGGG GTTGATCATG TTTTCAATCT TGCTGCAGAT ATGGGTGGGA TGGGATTTAT
TCAGTCTAAT CACTCTGTCA TTATGTACAA CAACACCATG ATTAGTTTCA ACATGATTGA GGCTGCCAGG ATTAACGGCA
TTAAGAGGTT TTTTTATGCC TCTAGTGCTT GTATCTACCC AGAGTTTAAA CAGTTGGAAA CCAATGTGAG CTTGAAGGAG
TCTGATGCAT GGCCAGCTGA GCCACAAGAT GCGTATGGAC TGGAGAAGCT TGCAACTGAA GAGTTATGCA AGCACTATAA
CAAGGATTTT GGAATTGAGT GCCGTATTGG GAGGTTCCAT AACATCTATG GCCCTTTTGG AACTTGGAAA GGTGGAAGGG
AGAAGGCTCC TGCTGCTTTT TGTCGGAAGG TAATTACTTC CACTGATAGA TTTGAGATGT GGGGAGATGG ATTGCAAACA
CGATCATTTA CCTTCATTGA TGAGTGTGTT GAAGGTGTGC TAAGATTGAC AAAATCTGAC TTCCGTGAGC CGGTAAATAT
TGGAAGTGAT GAGATGGTTA GCATGAATGA GATGGCCGAG ATTATTCTTG GCTTTGAGAA CAAGAATATT CCTATTCATC
ACATTCCTGG TCCCGAGGGT GTTCGAGGTC GTAATTCAGA CAACACACTG ATAAAAGAAA AGCTTGGCTG GGCTCCAACT
ATGAAGTTGA AGGATGGGCT GAGGATCACA TACTTCTGGA TTAAGGAGCA GATTGAGAAG GAGAAGGCTC AAGGTACTGA
TATATCAGTG TATGGGTCGT CCAAAGTGGT GCAGACTCAG GCCCCAGTTC AACTAGGTTC ACTTCGGGCT GCAGATGGCA
AAGAATGAAG TGGTCAACAC AAGGCTGTAG TGACCACCTA AATGTTTCAA GTGAAGAGCT GCATTATATA TATATAGTAT
GTGTTTATGT TTAATTAGGG CTAAGGATTT CTTATGTCTC TGCAGGTTGT TTTACGTGTA TTTTATGTAG TTCTCATAAG
GCACTTCCTG GTTGCTTAAG GTGGTTTACT ACACTGGAAG CTCTAAATTA TTTGTTTGAT GTCTGAATGA TTGATTTATA
AGCAAATAAA ATTTTCTTGT GTAAATGGTA GATTTTACTA AGAGTGGAGC ATTCTTT

>Vigan.08G162400.01
ATGGGAAGTG CTGGAAAAAC TGACTATGGT GAGTACACTT ATGAGAGTCT TGAGAGAGAG CCTTACTGGC CCTCAGAGAA
GCTTAAGATT TCCATCACTG GGGCTGGGGG TTTTATTGCA TCACACATAG CTCGGCGCCT CAAGACGGAG GGGCATTATG
TTATTGCTTC TGACTGGAAG AAAAATGAGC ACATGACTGA GGACATGTTC TGTGATGAAT TCCATCTTGT TGATCTCAGG
GTCATGGATA ACTGCCTGAA GGTTACTGAG GGGGTTGATC ATGTTTTCAA TCTTGCTGCA GATATGGGTG GGATGGGATT
TATTCAGTCT AATCACTCTG TCATTATGTA CAACAACACC ATGATTAGTT TCAACATGAT TGAGGCTGCC AGGATTAACG
GCATTAAGAG GTTTTTTTAT GCCTCTAGTG CTTGTATCTA CCCAGAGTTT AAACAGTTGG AAACCAATGT GAGCTTGAAG
GAGTCTGATG CATGGCCAGC TGAGCCACAA GATGCGTATG GACTGGAGAA GCTTGCAACT GAAGAGTTAT GCAAGCACTA
TAACAAGGAT TTTGGAATTG AGTGCCGTAT TGGGAGGTTC CATAACATCT ATGGCCCTTT TGGAACTTGG AAAGGTGGAA
GGGAGAAGGC TCCTGCTGCT TTTTGTCGGA AGGTAATTAC TTCCACTGAT AGATTTGAGA TGTGGGGAGA TGGATTGCAA
ACACGATCAT TTACCTTCAT TGATGAGTGT GTTGAAGGTG TGCTAAGATT GACAAAATCT GACTTCCGTG AGCCGGTAAA
TATTGGAAGT GATGAGATGG TTAGCATGAA TGAGATGGCC GAGATTATTC TTGGCTTTGA GAACAAGAAT ATTCCTATTC
ATCACATTCC TGGTCCCGAG GGTGTTCGAG GTCGTAATTC AGACAACACA CTGATAAAAG AAAAGCTTGG CTGGGCTCCA
ACTATGAAGT TGAAGGATGG GCTGAGGATC ACATACTTCT GGATTAAGGA GCAGATTGAG AAGGAGAAGG CTCAAGGTAC
TGATATATCA GTGTATGGGT CGTCCAAAGT GGTGCAGACT CAGGCCCCAG TTCAACTAGG TTCACTTCGG GCTGCAGATG
GCAAAGAATG A

>Vigan.08G162400.01
MGSAGKTDYG EYTYESLERE PYWPSEKLKI SITGAGGFIA SHIARRLKTE GHYVIASDWK KNEHMTEDMF CDEFHLVDLR
VMDNCLKVTE GVDHVFNLAA DMGGMGFIQS NHSVIMYNNT MISFNMIEAA RINGIKRFFY ASSACIYPEF KQLETNVSLK
ESDAWPAEPQ DAYGLEKLAT EELCKHYNKD FGIECRIGRF HNIYGPFGTW KGGREKAPAA FCRKVITSTD RFEMWGDGLQ
TRSFTFIDEC VEGVLRLTKS DFREPVNIGS DEMVSMNEMA EIILGFENKN IPIHHIPGPE GVRGRNSDNT LIKEKLGWAP
TMKLKDGLRI TYFWIKEQIE KEKAQGTDIS VYGSSKVVQT QAPVQLGSLR AADGKE*