GBrowse Details

Vigan.08G162900.01

Basic Information:
Name: Vigan.08G162900.01
Multiple alignment
Variant Information
Position: Chr08:14554471..14557252 (- strand)
Length: 2782
Functional Information:
Description: Similar to PITH domain-containing protein At3g04780-like. [XP_004495796.1, Cicer arietinum]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro: Thioredoxin (IPR005746)
Galactose-binding domain-like (IPR008979)
PITH domain (IPR010400)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.68,22.37,36.02,31.24,53.44,56.51,66.99,35.70
Arabidopsis thaliana homolog: AT3G04780.1
Automatic updates:
Name: NM_001250812 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PITH domain-containing protein (LOC100305857), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:14554471..14555137 (- strand)
Length: 667
Type: three_prime_UTR
Position: Chr08:14555138..14555186 (- strand)
Length: 49
Type: CDS
Position: Chr08:14555714..14555791 (- strand)
Length: 78
Type: CDS
Position: Chr08:14555895..14555941 (- strand)
Length: 47
Type: CDS
Position: Chr08:14556060..14556117 (- strand)
Length: 58
Type: CDS
Position: Chr08:14556202..14556250 (- strand)
Length: 49
Type: CDS
Position: Chr08:14556584..14556707 (- strand)
Length: 124
Type: CDS
Position: Chr08:14556894..14556980 (- strand)
Length: 87
Type: CDS
Position: Chr08:14557074..14557112 (- strand)
Length: 39
Type: CDS
Position: Chr08:14557113..14557252 (- strand)
Length: 140
Type: five_prime_UTR


>Vigan.08G162900.01
TATTAATTTA TGATTACAAA CTAGGAAGTT CCTTATTCGA AGCTGGGTTT GTTTTAGGCC ATTGATATTT GATTCCTCTC
TCTTTCTCTC TCCCTCTCCC TCTCTTTCTC TTTCTTTCTC TCGCAAAAAC CGTATCGACA ATGTCTGGGG AATCAGCCAG
CGCTATTCCA AAGGGTCAAG TTGATCTCTT AGATTTCATA GACTGGTCTG GGGTTGAATG TCTCAATCAA AGCTCCACCC
ACTCTCTCTC CAATGCTATC AAACAGGGTT ATAGAGAAGA TGAGGGTTTG CATCTGGAGA GTGATGCAGA TGAACAGCTT
TTGCTCTATA TTCCTTTCAC ACAAGTTATT AAACTCTACT CCATTGTTAT CAAAGGTCCT GAAGATGAAG GCCCCAAGAC
GGTGAAGTTA TTTTCTAACA AGGAGCATAT GGGATTTAGT AATGTCAATG ATTTTCCACC AAGTGACGTG GCAAATTTGT
CGGAAGAAAA CCTTAAGGGG AAACCAGTAC TTCTAAAGTA TGTCAAATTC CAAAATGTTC GTAGCTTGAC AATTTTTATT
GAGGACAACC AAACAGGTTC AGAGATCACA AAAGTTCAGA AGATTGTGCT GCATGGTTCA ACCGTTGAAA CAACGGACAT
GAAGGGTTTG AAGAAGATTG AGGATCATTA ATCATCGAGG AGATTCGAGT TTTCTCCCAA TCCTCCATTA GAAATTTTGA
TTGGAAATGT TGTGTTAGCT TCGTGAATGA TGATGGTTTA TGACTTCTAA TGTCTAACTC ATTTCAAATA AAACTGATGC
AAACTATATC CATATGATTG TGACAATTTG TGTTTGGAAG CAAACATTTC AAGCTGCATG ATTATTTGTT GTCTTTGAAA
CATGTAAACT TCGTCGAGGT TAGAATTTCC TTCAACGACT GGATCTGGAA GGAGCTAAGC TGCGTGAAGG TGTCATCCTA
ATCAGTCATT TAAATCATCA CCCTTATATG CACCTAACAG GAACTTGCCT GTGTTTTCTG TTCACCCTTG TACACCATTA
TTCTCTATAT AGAATAACGG AAGAGTTCTG AACAGTAGGT GGCTCGTACG GCCAATTATC AATATTTGTG ACTATATCCT
CGCCTGTGAT TCACTTTTGC AATATAAGTT TTCAATCAGT ATTTTTAATA AATTTTTTGT CGCCAAAGTT GTAGTCACTA
TTGGCAAAAT CAGAATAGCT TAGAAACTGC ACTAAGCTGG TTTAAGAGAT GCCAGGTTAT CTATTTCAAT ACAGTATATC
GATTGTGTTG CTTGTAACTA TATTTTTTAA CCTTCATAAT TCAATATTTA AGTGTCGG

>Vigan.08G162900.01
ATGTCTGGGG AATCAGCCAG CGCTATTCCA AAGGGTCAAG TTGATCTCTT AGATTTCATA GACTGGTCTG GGGTTGAATG
TCTCAATCAA AGCTCCACCC ACTCTCTCTC CAATGCTATC AAACAGGGTT ATAGAGAAGA TGAGGGTTTG CATCTGGAGA
GTGATGCAGA TGAACAGCTT TTGCTCTATA TTCCTTTCAC ACAAGTTATT AAACTCTACT CCATTGTTAT CAAAGGTCCT
GAAGATGAAG GCCCCAAGAC GGTGAAGTTA TTTTCTAACA AGGAGCATAT GGGATTTAGT AATGTCAATG ATTTTCCACC
AAGTGACGTG GCAAATTTGT CGGAAGAAAA CCTTAAGGGG AAACCAGTAC TTCTAAAGTA TGTCAAATTC CAAAATGTTC
GTAGCTTGAC AATTTTTATT GAGGACAACC AAACAGGTTC AGAGATCACA AAAGTTCAGA AGATTGTGCT GCATGGTTCA
ACCGTTGAAA CAACGGACAT GAAGGGTTTG AAGAAGATTG AGGATCATTA A

>Vigan.08G162900.01
MSGESASAIP KGQVDLLDFI DWSGVECLNQ SSTHSLSNAI KQGYREDEGL HLESDADEQL LLYIPFTQVI KLYSIVIKGP
EDEGPKTVKL FSNKEHMGFS NVNDFPPSDV ANLSEENLKG KPVLLKYVKF QNVRSLTIFI EDNQTGSEIT KVQKIVLHGS
TVETTDMKGL KKIEDH*