VIGGS:GBrowse

Vigan.08G169000.01

Basic Information:

Name:	Vigan.08G169000.01 Multiple alignment Variant Information
Position:	Chr08:15116484..15120521 (- strand)
Length:	4038

Functional Information:

Description:	Similar to Uncharacterized protein. [K7LJM2, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.16,2.20,2.31,2.57,1.28,1.78,0.95
Arabidopsis thaliana homolog:	AT1G54820.1

Automatic updates:

Name:	NM_001250743 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein kinase (LOC100499645), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:15116484..15117313 (- strand)
Length:	830
Type:	three_prime_UTR

Position:	Chr08:15117314..15117487 (- strand)
Length:	174
Type:	CDS

Position:	Chr08:15117607..15117696 (- strand)
Length:	90
Type:	CDS

Position:	Chr08:15117851..15117980 (- strand)
Length:	130
Type:	CDS

Position:	Chr08:15118256..15118641 (- strand)
Length:	386
Type:	CDS

Position:	Chr08:15119387..15119634 (- strand)
Length:	248
Type:	CDS

Position:	Chr08:15119912..15120215 (- strand)
Length:	304
Type:	CDS

Position:	Chr08:15120216..15120521 (- strand)
Length:	306
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G169000.01
CTTCCGAGAT TTTCTTATGC AAAGAAAAAG ACAATTCTTC AGAAAATAAC AGAAGAAGAG ACAAAGGAAG TACACCAAAA
CCACTTAATT AAATATTCAC GAGAGGCTGG CTTGCCCTCC TAGGAAAGGA GGCTTACAAC TAGCAAAATG CTTGCACCCT
CATTCTTTCG TTTATTACTG TAAACAAAAT CCATTTCGGC ATTCCCCACT CTCCCCATCC TCTTTTATTT CCTGCCTTCC
AATCTCAAAC TTCTTTCTCA CCTCAAACAC ACAACCCATT TACTTTTTTT CTCTCTGTTG TCAGTCATGG AAGTTAATAC
TACAGCCACC GTACCTGCAG GGCCACCAGC TAAGAACCAT TCTTTCACAC AGCACCGCTT ACATTCAGAA AGACATAGAC
ATAGCCACGG CCATTTCCCC ACCAAAACCA TTCTCATTAC CGTCTCATTC GTTACCTTAG TTACGGTCCT ATTTGTCATT
TTTGTGGTCC TATTCTTGAT CCGTCGCCAA AAATCTTCCT CCAAAAGTGG CACTTGCAAA GAAGACAGAA CAGAGCTTCA
TGACACAAGC AGCAGGCTCA TTACTTCATC AACGTTGAAT TCTAGCCCAG AAGTAAAGAG TGGGTGTCTT CACGGGGGAA
ATTTGGGCAG GACCCCAGCA CCTACATTTC GAGGAGTCCA AGTGTTCACA TATAGGGAAC TAGAAATTGC TACAGATGGA
TTCAGTGAAA GAAATGTGAT TGGTGGTAAT GGAGGACATG GCTTGATGTA TAGAGGAGTT CTAAGTGATG GCACTTTGGC
AGCAATTAAG TTGCTTCGCA GTGAGGGTAA GCAAGGGGAA CGTGCCTTCA GAATAGAGGT CGATCTCCTA AGTCGCTTGC
ACTCTCCATA TTTGGTGGAG TTACTTGGCT ATTGCGCTGA CCAACACCAC AGGTTATTGA TTTTTGAATA CATGCCCGAT
GGTACACTTC ACCACCATCT TCACTCCCCC AACGATCAAA CTCAACCGTT GGATTGGTGG GCCAGGATGA GGATAGCCCT
TGATTGTGCC AGGGCACTGG AATTCCTTCA TGAACATGCA GTGTCTCCGG TGATCCACAG AGACTTCAAG ACTAACAACG
TTCTGCTGGA TCAAAATTTC CGTGCCAAGG TGTCTGATTT TGGATTGGCT AAGATGGGAT CAGAGAAGAA GAACGGTCAG
GTTTCCACCC GTGTGTTGGG GACCACTGGA TATCTGGCAC CAGAGTACGC CACGGGTAAG CTTACCACAA AGTCAGATGT
TTACAGCTAT GGTGTGGTTC TTCTCGAACT CCTCACGGGA CGTGTGCCTG TTGATATCAA GCGGGCCCAG GGAGAACACG
TCCTTGTCTC TTGGGCTCTT CCACGGTTGA CAAACAGAGA AAAGGTGATT GAAATGGTTG ATCCAGCTCT ACGCGGACAG
TACTCAAAGA AGGACTTAAT TCAGATAGCT GCCATTGCAG CAATGTGCAT ACAGCCAGAA GCTGATTACA GGCCGCTCAT
GACAGATGTT GTACAATCAC TAATACCACT TGTTAGGAAC CCATCCTCCC TTAGTTCTAG CTCCCTACGA TTTCAGAAAC
AAACACCAAA GAGCAGAAGC AGCCTAGAAA TAAACTAACC TAGTGTTACA CTAAACTAGC CCTTGGACAA ACATTAGGCC
CAAAAACACG AGCAATATCA CACTCAATGG GGGGCACCAC CGAATTGGCA AGGTCCAATG GAATTCCCTC ATCTCTACAG
CCTTAAATAG CGGAGAAGAG AGGAGGGAAG AAAATGCAAA CAAAAAGACG ATAAGGAGGC ATGGAACTTG TAGTTCTAGA
TTTTGCTTTT ATCATTTTAT GATCTGTATT TTAGATTGTC TTTGTCATGA GAAACTTGCA AAGATACAAG GTAAGAAAAT
AAGAGGAATA TGAACTTTCT AATAATTATG TCGCTAATAT GAACTGACAT TTCTCCTGCA ATATGATGAA ACTTAATATT
CAAGAGTATC GCTTCCTGTA AATTCTTAAA TCCCGTAACT CACCGCGTAA AAACAAAACT TAGTGACATA CCTAAAATCA
GACTGGATCA CTTTTGACCA ACGGAAAACG AACTTAAATA TGGAGATCCC CCTCTTAGAG ACTGACAAGG AGATCGATGG
AATCTAGCTT CTTTCTATCT GGCAATTGGC AAAGAGCTGA ATTTTAGGCA GTGCAATAGG AGACAACTAT ATTAAAAGCT
AATTCACTTT TAGTATAAGG AGAAATACAA ACATGCAGAC GTGACAGACA TATGGAATAA TGCTGACCTG TTTTAACCCT
CACGACTGGT GTCTGACTGA AAGCAAGGAT TCCCCACAAA GCATGTAGCA CAACAAGGAG CCCGGCTTTT CTGATTTTAT
TTGATTTTGT TTTGTATACC TGTTACTTTT ATGTAATACA CCAGCTAGTG CTATGTCACT GATATATA

[show][hide][copy]CDS

>Vigan.08G169000.01
ATGGAAGTTA ATACTACAGC CACCGTACCT GCAGGGCCAC CAGCTAAGAA CCATTCTTTC ACACAGCACC GCTTACATTC
AGAAAGACAT AGACATAGCC ACGGCCATTT CCCCACCAAA ACCATTCTCA TTACCGTCTC ATTCGTTACC TTAGTTACGG
TCCTATTTGT CATTTTTGTG GTCCTATTCT TGATCCGTCG CCAAAAATCT TCCTCCAAAA GTGGCACTTG CAAAGAAGAC
AGAACAGAGC TTCATGACAC AAGCAGCAGG CTCATTACTT CATCAACGTT GAATTCTAGC CCAGAAGTAA AGAGTGGGTG
TCTTCACGGG GGAAATTTGG GCAGGACCCC AGCACCTACA TTTCGAGGAG TCCAAGTGTT CACATATAGG GAACTAGAAA
TTGCTACAGA TGGATTCAGT GAAAGAAATG TGATTGGTGG TAATGGAGGA CATGGCTTGA TGTATAGAGG AGTTCTAAGT
GATGGCACTT TGGCAGCAAT TAAGTTGCTT CGCAGTGAGG GTAAGCAAGG GGAACGTGCC TTCAGAATAG AGGTCGATCT
CCTAAGTCGC TTGCACTCTC CATATTTGGT GGAGTTACTT GGCTATTGCG CTGACCAACA CCACAGGTTA TTGATTTTTG
AATACATGCC CGATGGTACA CTTCACCACC ATCTTCACTC CCCCAACGAT CAAACTCAAC CGTTGGATTG GTGGGCCAGG
ATGAGGATAG CCCTTGATTG TGCCAGGGCA CTGGAATTCC TTCATGAACA TGCAGTGTCT CCGGTGATCC ACAGAGACTT
CAAGACTAAC AACGTTCTGC TGGATCAAAA TTTCCGTGCC AAGGTGTCTG ATTTTGGATT GGCTAAGATG GGATCAGAGA
AGAAGAACGG TCAGGTTTCC ACCCGTGTGT TGGGGACCAC TGGATATCTG GCACCAGAGT ACGCCACGGG TAAGCTTACC
ACAAAGTCAG ATGTTTACAG CTATGGTGTG GTTCTTCTCG AACTCCTCAC GGGACGTGTG CCTGTTGATA TCAAGCGGGC
CCAGGGAGAA CACGTCCTTG TCTCTTGGGC TCTTCCACGG TTGACAAACA GAGAAAAGGT GATTGAAATG GTTGATCCAG
CTCTACGCGG ACAGTACTCA AAGAAGGACT TAATTCAGAT AGCTGCCATT GCAGCAATGT GCATACAGCC AGAAGCTGAT
TACAGGCCGC TCATGACAGA TGTTGTACAA TCACTAATAC CACTTGTTAG GAACCCATCC TCCCTTAGTT CTAGCTCCCT
ACGATTTCAG AAACAAACAC CAAAGAGCAG AAGCAGCCTA GAAATAAACT AA

[show][hide][copy]PROTEIN

>Vigan.08G169000.01
MEVNTTATVP AGPPAKNHSF TQHRLHSERH RHSHGHFPTK TILITVSFVT LVTVLFVIFV VLFLIRRQKS SSKSGTCKED
RTELHDTSSR LITSSTLNSS PEVKSGCLHG GNLGRTPAPT FRGVQVFTYR ELEIATDGFS ERNVIGGNGG HGLMYRGVLS
DGTLAAIKLL RSEGKQGERA FRIEVDLLSR LHSPYLVELL GYCADQHHRL LIFEYMPDGT LHHHLHSPND QTQPLDWWAR
MRIALDCARA LEFLHEHAVS PVIHRDFKTN NVLLDQNFRA KVSDFGLAKM GSEKKNGQVS TRVLGTTGYL APEYATGKLT
TKSDVYSYGV VLLELLTGRV PVDIKRAQGE HVLVSWALPR LTNREKVIEM VDPALRGQYS KKDLIQIAAI AAMCIQPEAD
YRPLMTDVVQ SLIPLVRNPS SLSSSSLRFQ KQTPKSRSSL EIN*