GBrowse Details

Vigan.08G171500.01

Basic Information:
Name: Vigan.08G171500.01
Multiple alignment
Variant Information
Position: Chr08:15273146..15276005 (+ strand)
Length: 2860
Functional Information:
Description: Similar to Uncharacterized protein. [I1NIZ6, Glycine max]
GO: Biological Process: cell wall macromolecule catabolic process (GO:0016998)
Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
LysM domain (IPR018392)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.76,22.37,6.90,12.99,8.18,20.19,9.27,9.85
Arabidopsis thaliana homolog: AT1G55000.1
Automatic updates:
Name: NM_001253181 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max F-box protein At1g55000-like (LOC100803417), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:15273146..15273296 (+ strand)
Length: 151
Type: five_prime_UTR
Position: Chr08:15273297..15273710 (+ strand)
Length: 414
Type: CDS
Position: Chr08:15274561..15274935 (+ strand)
Length: 375
Type: CDS
Position: Chr08:15274936..15276005 (+ strand)
Length: 1070
Type: three_prime_UTR


>Vigan.08G171500.01
AATTAATATA GTTTTCAAAT ACTAATGATG ATGATATAAA AAAAATCTTG GGTCATTCTT TGTGGACAAA TGATTGTGGC
AGTGAGATAA GACGTGTCCT TTTATCCCCT CTACACACAT ACGCCATCCT TTGTATTTCA ATTTCACTCC AATGGGTTGT
TGTTGCGACG AAGACGACGG TGACATTTTC CGGCAACTCA TCAATTCCAA TTTCTCTTCC TCATCCTCCT CCACCGCTAC
CACCACTGCC ACCACAGTGA TCTCCCCCAT GAATTCCCAT TTCTCGGCAC TCTCCTCCAC CGACATCCTC CTCCTCATCT
TCCAGAACCT TCCGATCCCC GATCTCGCCC GTGCCAGCTG CGTCTGCCGT CTCTGGAACT CCGTCGCCTC CCAGAGGGAG
ATGCTCACAA GAGCCTTCGT TGCCCCTTGG AAATTGAACC ACGTTATCGG CGACCCGCTC TCTGGAAGCT TCTGGAGAGA
CAATTCCATC GCCAAATTCG CCATCTCCCA TCGCATTTCC CGCGGCGACA CCGTCGCTAG CCTCGCCGTC AAGTACGCTG
TTCAGGTAAT GGACATAAAG CGCCTGAACA ACATGATAAG CGACCATGGC ATATACTCAA GGGAAAGGTT ATTAATCCCT
ATTAGTAATC CTGATATTCT GATTAACAGA ACGTGCTTTA TTGAGCTGGA TGTCTATGCA AAACGAGAAG TAGCAGTGCT
GTATCCTAAT GATGTGCCAG ACACGAGGAC TGCCTACGTG TCAAACAGAA TTTCCTCAGA AGAAAGCAAC AAAAAGGTGG
TTGATTTCTT GAAGAGAAGC ATGCATGTTG ATAATGAAAC AGCTCAATAT TACTGGTCTG TTTCAAATGG TGATCCACGA
GCGGCATTTG CCGAGTTTTC TGCAGACCTT AACTGGGATA GGCAAGCAGG GCATTCATAG TCTTTCTTAA GGTTACCTTG
TTATTTAAGA GGTTGGTGGC AAGTTGAAAA CAAATTATTT AAGAGGCTGC TTGGCAAGCA AATAGATAAA TAATTAAGAG
ACTGTGTTGC AGGCAAGTAT ATGCTCCAGT AGGTTGCCTC TTAAAAAAAT TGTTCATTCT CCTCTGATTG AATACTGCTT
GAGTTCTAAA CAGATTGTCA TATTTGCTTA TGAAACTACA GTCATATACT GTTGCCGTGT GTAAAAGATT TCAGCCACTC
ATGTGGTGAA GTGTGTTCAG AATATGTGTA AATTTTATTA TTACTCTTTT AAAAAAGAAA TTGATGCATT ATTTTAGTCT
GGTCATTATA TGCTTGGCGC GGAAAGGTTT GATTTTATTC ACATTTGTAA GCATTCATAT TTACCACTCC AGATCAGAAT
TTATGCCAAG AATACGCTGT TCGAACAAAA AGTGGATACG AGGATGGCCC GTTTTCCCTT TTCCTTCCAG TATTTTGTTG
TGAAATATGA TAGTTTTGTA GGGAGAGATT GAGCAAACTT TGAGCATTTC AGAAGCTAAA TTAATACTAT CCAATAACTT
AATAGATAAG GGTGTGTGAG GAATCAGAAT CTATTTGTGA AACGAATGTT TGATATTCTA TTCTCATCCT GTCTTTTTGT
AACAGTTAAT GTCTTTATGA ATTACTGCCT TTTCTAAGCC TTGTGCTGTC AGTTGCTAGA ACCTTTGAAT GGAGAATGTT
GAATCGGTGG TACTGTTAAC TTGTACCCTC CAATAGCAAA ATGATGATTT GATTGATTTC AAGTCAGCCA CCTAGTACGG
CTGGAACCAC GGAATGTCCA TGAGATGAAC ATTGTCTCAG GCAACTTGAC TCGATGTGAT TAGAAAGCTT CCATCTTTCT
TGATTGATCG ACTGTGAAAC TGTTGGAACT TCTGAAAGTA TTCATGCTAT TAATTTTTGA ATTTTAATGG GATTGAGAGA
TATGTCAGCA AGCGGCAAGG GAAATGGTGT AACTTGAAGA AACAGTTTGA CAGTTTTTCT TTAATAGTAC ATTAATCTTT
GAATGATTTA 

>Vigan.08G171500.01
ATGGGTTGTT GTTGCGACGA AGACGACGGT GACATTTTCC GGCAACTCAT CAATTCCAAT TTCTCTTCCT CATCCTCCTC
CACCGCTACC ACCACTGCCA CCACAGTGAT CTCCCCCATG AATTCCCATT TCTCGGCACT CTCCTCCACC GACATCCTCC
TCCTCATCTT CCAGAACCTT CCGATCCCCG ATCTCGCCCG TGCCAGCTGC GTCTGCCGTC TCTGGAACTC CGTCGCCTCC
CAGAGGGAGA TGCTCACAAG AGCCTTCGTT GCCCCTTGGA AATTGAACCA CGTTATCGGC GACCCGCTCT CTGGAAGCTT
CTGGAGAGAC AATTCCATCG CCAAATTCGC CATCTCCCAT CGCATTTCCC GCGGCGACAC CGTCGCTAGC CTCGCCGTCA
AGTACGCTGT TCAGGTAATG GACATAAAGC GCCTGAACAA CATGATAAGC GACCATGGCA TATACTCAAG GGAAAGGTTA
TTAATCCCTA TTAGTAATCC TGATATTCTG ATTAACAGAA CGTGCTTTAT TGAGCTGGAT GTCTATGCAA AACGAGAAGT
AGCAGTGCTG TATCCTAATG ATGTGCCAGA CACGAGGACT GCCTACGTGT CAAACAGAAT TTCCTCAGAA GAAAGCAACA
AAAAGGTGGT TGATTTCTTG AAGAGAAGCA TGCATGTTGA TAATGAAACA GCTCAATATT ACTGGTCTGT TTCAAATGGT
GATCCACGAG CGGCATTTGC CGAGTTTTCT GCAGACCTTA ACTGGGATAG GCAAGCAGGG CATTCATAG

>Vigan.08G171500.01
MGCCCDEDDG DIFRQLINSN FSSSSSSTAT TTATTVISPM NSHFSALSST DILLLIFQNL PIPDLARASC VCRLWNSVAS
QREMLTRAFV APWKLNHVIG DPLSGSFWRD NSIAKFAISH RISRGDTVAS LAVKYAVQVM DIKRLNNMIS DHGIYSRERL
LIPISNPDIL INRTCFIELD VYAKREVAVL YPNDVPDTRT AYVSNRISSE ESNKKVVDFL KRSMHVDNET AQYYWSVSNG
DPRAAFAEFS ADLNWDRQAG HS*