VIGGS:GBrowse

Vigan.08G173900.01

Basic Information:

Name:	Vigan.08G173900.01 Multiple alignment Variant Information
Position:	Chr08:15534107..15537601 (+ strand)
Length:	3495

Functional Information:

Description:	Similar to uncharacterized protein. [C6TAN1, Glycine max]
GO:	Biological Process: protein catabolic process (GO:0030163)
	Cellular Component: cytoplasm (GO:0005737)
	Molecular Function: nucleotide binding (GO:0000166)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: hydrolase activity (GO:0016787)
	Molecular Function: nucleoside-triphosphatase activity (GO:0017111)
InterPro:	AAA+ ATPase domain (IPR003593)
	ATPase, AAA-type, core (IPR003959)
	ATPase, AAA-type, conserved site (IPR003960)
	26S proteasome subunit P45 (IPR005937)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:209.35,126.52,83.74,76.80,112.06,113.46,78.57,75.58
Arabidopsis thaliana homolog:	AT1G09100.1, AT3G05530.1

Automatic updates:

Name:	NM_001255650 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 26S protease regulatory subunit 6A homolog A-like (LOC100798637), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:15534107..15534265 (+ strand)
Length:	159
Type:	five_prime_UTR

Position:	Chr08:15534266..15534382 (+ strand)
Length:	117
Type:	CDS

Position:	Chr08:15534525..15534641 (+ strand)
Length:	117
Type:	CDS

Position:	Chr08:15534791..15534898 (+ strand)
Length:	108
Type:	CDS

Position:	Chr08:15535089..15535280 (+ strand)
Length:	192
Type:	CDS

Position:	Chr08:15535379..15535570 (+ strand)
Length:	192
Type:	CDS

Position:	Chr08:15535959..15536077 (+ strand)
Length:	119
Type:	CDS

Position:	Chr08:15536210..15536297 (+ strand)
Length:	88
Type:	CDS

Position:	Chr08:15536558..15536677 (+ strand)
Length:	120
Type:	CDS

Position:	Chr08:15536758..15536898 (+ strand)
Length:	141
Type:	CDS

Position:	Chr08:15537232..15537309 (+ strand)
Length:	78
Type:	CDS

Position:	Chr08:15537310..15537601 (+ strand)
Length:	292
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G173900.01
TTATTCATAA CCCTATAAAA ATTCCTTTAC AGAGCAACAA AAGCACGCCT TCGTCTTCGT TGGAAACACT TTAAGTATCG
CAGTTGTCCT TGGTTTTCTC TTTTATCTTT CCCCAAATTG TGAGTGTTAG TGTTGAATCG CTTGAAAGAA GCAATTGAAA
TGGCGAGCGC GATGGTAGAG GATGCGACCT TCGAAGATGA TCAGTTGGCT AATATGACCA CCGACGACGT CGTTAGAGCT
TCACGTCTTC TCGACAACGA GATTCGCATT CTCAAGGAAG AGTTGCAGAG GACCAATTTG GAATTGGAAT CGTACAAGGA
TAAGATCAAG GAGAATCAGG AAAAAATTAA GCTCAATAAG CAGTTGCCCT ACCTCGTTGG TAACATTGTT GAGATATTGG
AAATGAACCC AGAAGACGAG GCTGAAGAAG ATGGTGCAAA TATTGATCTT GATTCGCAAA GGAAGGGGAA GTGTGTTGTC
TTGAAGACTT CTACTCGACA GACAATCTTT CTTCCTGTTG TTGGGCTTGT TGACCCTGAC AAATTAAAAC CCGGTGATCT
TGTTGGTGTT AACAAGGATA GTTACTTAAT CTTGGATACC CTGCCTTCTG AGTATGATTC TAGAGTTAAG GCAATGGAAG
TCGATGAAAA GCCCACAGAA GATTACAATG ACATTGGTGG ATTAGAAAAG CAGATTCAAG AATTAGTCGA GGCCATTGTT
TTGCCCATGA CCCACAAGGA GCGGTTTCAA AAGTTAGGAG TTCGTCCTCC CAAGGGAGTG CTGTTATATG GACCTCCAGG
GACTGGGAAA ACATTGATGG CCCGTGCCTG TGCAGCACAG ACAAATGCCA CTTTTCTGAA ATTGGCAGGT CCTCAACTGG
TCCAGATGTT CATAGGAGAT GGAGCAAAAC TTGTTCGTGA TGCCTTTCAA CTAGCAAAGG AGAAGTCACC ATGCATTATA
TTTATAGATG AAATTGATGC AATTGGTACA AAGCGTTTTG ATAGTGAAGT AAGTGGAGAC AGGGAGGTAC AACGGACAAT
GTTAGAATTA CTTAATCAGC TTGATGGTTT TAGCAGTGAT GACAGGATTA AGGTGATAGC AGCAACAAAT CGTGCTGATA
TTCTTGACCC TGCCCTTATG CGTTCTGGTC GATTGGATCG TAAAATTGAG TTTCCACACC CAAGTGAAGA AGCAAGAGCC
CGTATTCTCC AGATCCATTC AAGGAAGATG AATGTTCATC CAGATGTGAA CTTTGAAGAA CTCGCACGGT CCACGGATGA
TTTCAATGGA GCACAACTGA AGGCTGTCTG TGTTGAGGCT GGCATGTTGG CTCTACGCCG TGATGCAACT GAGGTGAACC
ATGAGGACTT TAATGAAGGT ATTATTCAAG TCCAAGCAAA GAAGAAAGCA AGCCTGAATT ATTATGCATA GGCGGGATTG
TGGAGCAAGC TATTTTTCAG TTTACAGCGA TCTATTGAGA TATCACGAGC CAATGGAAAA CCTATGTGGA TGTTTGGCAT
TTATTATCTT TCTCTTATTC TTTTGTCAAT TTGTAGCCGT ATGATATAAA CCTATAGCAT GCTATAATCA TCGTATCTTT
TAAAAATACA GCCTAATCGT CAATTTGTTG TTAGTAATAG AAATTTGATC GGTTTGCAAT GTCTAAAATC TTGTTCATCA
GGCTAATATG ATATTCGACA TGGTAAACAA ACAAGACTTG TGA

[show][hide][copy]CDS

>Vigan.08G173900.01
ATGGCGAGCG CGATGGTAGA GGATGCGACC TTCGAAGATG ATCAGTTGGC TAATATGACC ACCGACGACG TCGTTAGAGC
TTCACGTCTT CTCGACAACG AGATTCGCAT TCTCAAGGAA GAGTTGCAGA GGACCAATTT GGAATTGGAA TCGTACAAGG
ATAAGATCAA GGAGAATCAG GAAAAAATTA AGCTCAATAA GCAGTTGCCC TACCTCGTTG GTAACATTGT TGAGATATTG
GAAATGAACC CAGAAGACGA GGCTGAAGAA GATGGTGCAA ATATTGATCT TGATTCGCAA AGGAAGGGGA AGTGTGTTGT
CTTGAAGACT TCTACTCGAC AGACAATCTT TCTTCCTGTT GTTGGGCTTG TTGACCCTGA CAAATTAAAA CCCGGTGATC
TTGTTGGTGT TAACAAGGAT AGTTACTTAA TCTTGGATAC CCTGCCTTCT GAGTATGATT CTAGAGTTAA GGCAATGGAA
GTCGATGAAA AGCCCACAGA AGATTACAAT GACATTGGTG GATTAGAAAA GCAGATTCAA GAATTAGTCG AGGCCATTGT
TTTGCCCATG ACCCACAAGG AGCGGTTTCA AAAGTTAGGA GTTCGTCCTC CCAAGGGAGT GCTGTTATAT GGACCTCCAG
GGACTGGGAA AACATTGATG GCCCGTGCCT GTGCAGCACA GACAAATGCC ACTTTTCTGA AATTGGCAGG TCCTCAACTG
GTCCAGATGT TCATAGGAGA TGGAGCAAAA CTTGTTCGTG ATGCCTTTCA ACTAGCAAAG GAGAAGTCAC CATGCATTAT
ATTTATAGAT GAAATTGATG CAATTGGTAC AAAGCGTTTT GATAGTGAAG TAAGTGGAGA CAGGGAGGTA CAACGGACAA
TGTTAGAATT ACTTAATCAG CTTGATGGTT TTAGCAGTGA TGACAGGATT AAGGTGATAG CAGCAACAAA TCGTGCTGAT
ATTCTTGACC CTGCCCTTAT GCGTTCTGGT CGATTGGATC GTAAAATTGA GTTTCCACAC CCAAGTGAAG AAGCAAGAGC
CCGTATTCTC CAGATCCATT CAAGGAAGAT GAATGTTCAT CCAGATGTGA ACTTTGAAGA ACTCGCACGG TCCACGGATG
ATTTCAATGG AGCACAACTG AAGGCTGTCT GTGTTGAGGC TGGCATGTTG GCTCTACGCC GTGATGCAAC TGAGGTGAAC
CATGAGGACT TTAATGAAGG TATTATTCAA GTCCAAGCAA AGAAGAAAGC AAGCCTGAAT TATTATGCAT AG

[show][hide][copy]PROTEIN

>Vigan.08G173900.01
MASAMVEDAT FEDDQLANMT TDDVVRASRL LDNEIRILKE ELQRTNLELE SYKDKIKENQ EKIKLNKQLP YLVGNIVEIL
EMNPEDEAEE DGANIDLDSQ RKGKCVVLKT STRQTIFLPV VGLVDPDKLK PGDLVGVNKD SYLILDTLPS EYDSRVKAME
VDEKPTEDYN DIGGLEKQIQ ELVEAIVLPM THKERFQKLG VRPPKGVLLY GPPGTGKTLM ARACAAQTNA TFLKLAGPQL
VQMFIGDGAK LVRDAFQLAK EKSPCIIFID EIDAIGTKRF DSEVSGDREV QRTMLELLNQ LDGFSSDDRI KVIAATNRAD
ILDPALMRSG RLDRKIEFPH PSEEARARIL QIHSRKMNVH PDVNFEELAR STDDFNGAQL KAVCVEAGML ALRRDATEVN
HEDFNEGIIQ VQAKKKASLN YYA*