GBrowse Details

Vigan.08G175900.01

Basic Information:
Name: Vigan.08G175900.01
Multiple alignment
Variant Information
Position: Chr08:15677290..15680905 (+ strand)
Length: 3616
Functional Information:
Description: Similar to Protein phosphatase 2C 73-like protein. [T2DNT9, Phaseolus vulgaris]
GO: Molecular Function: catalytic activity (GO:0003824)
InterPro: Protein phosphatase 2C (PP2C)-like domain (IPR001932)
Protein phosphatase 2C (IPR015655)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.34,16.53,8.78,14.19,0.32,3.78,0.41,7.40
Arabidopsis thaliana homolog: AT3G05640.1, AT5G27930.1
Automatic updates:
Name: NM_001255697 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable protein phosphatase 2C 73-like (LOC100794039), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:15677290..15678612 (+ strand)
Length: 1323
Type: five_prime_UTR
Position: Chr08:15678613..15678855 (+ strand)
Length: 243
Type: CDS
Position: Chr08:15678955..15679269 (+ strand)
Length: 315
Type: CDS
Position: Chr08:15679450..15679567 (+ strand)
Length: 118
Type: CDS
Position: Chr08:15679658..15679881 (+ strand)
Length: 224
Type: CDS
Position: Chr08:15680023..15680229 (+ strand)
Length: 207
Type: CDS
Position: Chr08:15680230..15680905 (+ strand)
Length: 676
Type: three_prime_UTR


>Vigan.08G175900.01
CCCAAATACA AATCTACATG GTTGTGTTGT ATGCATAGAA AAACTATCTT TGTTTTGATC TCCGTGGATA AAAGGGAACT
GAAGAAAACA GAACCAAACA AAAACAAGCA AACATGGACA CCGAGCCCTC TACGCCTTTG CTTTCTCGAA GTCTCAGCTG
GCTTTGTCGG AATTGCGTCC TGTTCTTCAG ACCACAACAA CTCCTCCTAC GCTCTCTCTA GTTCCTTCTT CCTCAATCTC
TCTACCAAAA ACTCCAAGGT CTTGTATCCA TTCCACTTTT ATGTTTTCTT TTTAAATCTT CTTCAAACAC TTTGTTTTCT
TCTCTTCACT CCATTTCAGA TCAAATGAAA CAAAATGAGA TATCACAATT GGATCAGGGA CTTAACCATC TGTTTTTGTT
TTTCTCTTAT GATGTTCTTC TGGCTTTTTG GGTGGATTGG GAGGTTAAAA TGGTTGCTAA AATAGTTGCT GCTTCTATAA
GCTTTTTGGG ATATCCTTCA TGAAAAAATT CAGTTTTCCT CAGGTTCTAT ATGCACAACC TCTTATTTTA TTCTGGACAT
ACCAATAAAA TAGGTTTCTT TTACATGAGG TGAAACATCC AATCTCTGAA AAAGCAAGGC GAAAAATGAT ACTTTTTGGG
GTCCCAATTC AGTTACGAAT AAACAAATGA CTCTTGAGCA GTTGAATCCT GTTATCCAGA CTTTTGTATG CTCTGAATTT
TCTCCTACTT TTGGTATCCT TACTGGAAGA AGAAACCAAC AGAAACTATG GCCCACGCTG TTGATTTTTT GAGCCTAGTA
AGGAAAATTA TATAGGCGTA TCAGATTTTT TTTCTTGTAG CTTCAATCAA ACTTGGCCGC ATTGCATGAT TCAGACTTGC
TGGGCTCCAG TTTTGGTAGT CCTTGATTTC TCCAGACATC TTCCACATAG AGAATTCCAC GTGCAACGTT GGAATTCAGA
CTAGGAATGG TTTTTTTTTT CATTAAGCTC TTCAAGGATT TAGCCCTTTT CTGAATGAAT CCTGAGTCCT GTTCCTTCGG
ACTCGAAAAT TGTCTTTTGT TCCATTACAA CATCTCCCAG GATTCCCCAT CACAGTATAC ACACAATTGT TTCACTCTTC
TGGTAATCAT TAAGGAAAGA ATAAAATACT AATAAAACAA AATGAAACGG TTCCTTCCCG TGAACTATTC GAAAATTTTC
ATACCTGCGA GTCATGCTTA ATTGATATAA TTTTTCACTG TCCAGTTCTG TACTATATAC ATCAAGGGAA TACAAGAGGC
ATAAGTAAGC AGCGTGCAGC GGTGGAATCA TACTGCAGTG TTGATGGGGC ATTTTTCATC TGCGTTCAAT AGGTTGGCAA
AGTCCTTTGC AACCAAGAGA AGTGGGAGTT CTGATGGATG CAACGGAAGA GAAGCTGCGG AAGCAATGGC AAAGGAAGCC
AAAAAAAATC ACTTCATGTT GCATAGCTCC GGCACCATTA ATGTTGACGG TTCAGACAAC TTTGCCTCAC TTTTCTCCAA
AAAAGGAAAG AAAGGAGTCA ATCAGGATTG CTGCGTAGTA TGGGAAGAAT TTGGGTGCCA AGAGGACATG ATTTTCTGCG
GGATTTTTGA CGGGCACGGG CCATGGGGTC ACTTTGTGGC CAAGAGAGTA AGAGAGTCAA TGCCACCATG TTTGCTATGC
AACTGGCAGG AGACACTTTC CCAAACTTCA CTTGATCCAG ATGTTGATGT TGATATTACG GCAGAGAAAA AGCAACACCG
GTTCAATATA TGGAAGCACT CTTACTTGAA GACCTGTGCT GCCATTGATC GAGAACTAAA GCAGAATCGC AAGATAGATT
CATTTTTCAG CGGAACAACT GCCCTGTCCA TTGTTAGACA GGGTGAATTA ATTGTAATTG CAAACGTTGG TGACTCTCGC
GCCGTGTTAG CCACAGCATC AGATGATGGA AGTTTGGTAG CAGTTCAGTT GACAGTAGAT TTCAAGCCCA GTTTACCTCA
GGAAGCGGAG AGAATAGTGG AGTGCAAAGG ACGAGTTTTC TGCTTGGAAG ACGAGCCTGG GGTGTACAGG GTGTGGTTAC
CGGAGGAGGA GTCACCAGGA CTTGCCATGT CAAGGGCTTT TGGTGACTAC TGCGTCAAAG AGTATGGTCT TATTTCAGTG
CCTGAAGTAA CACACAGGAA CATAACCAGC AAAGACCAGT TTGTTGTACT AGCCACTGAT GGGGTGTGGG ATGTAATCTC
CAATCAAGAA GCAGTGGATA TTGTGCGTTC AACAGCAGAC AGAACAGAGT CTGCGAAACA TTTGGTGGAG TGTGCGATGC
GTGCATGGAA ACGCAAGAGG AGGGGCATTG CAATGGACGA TATTTCAGCT ATTTGTCTCT TCTTTCACTC TTCACCATCA
CTTCACCAAG TTCATGCCAC CCTAGAATAG AACAGAACAT TTATCATGTA AAATTGGCAA GTCAAGTGCC ACTTGCTGTT
GCATCCATGT AAACATGGTC CCCTCCGATT AAGGTTTATT CAAATCGATG TCGTGTCTCA GTCTCCTCTT TAATTTGTTA
ACCTAATTAA TCACGTCTAT CTTTTTTGTT TTTTAGTATC AACATGTCAC CACCTACGTG CTTAAATACG CAGTTTTTTT
ATGACTCTCA CATTGGAATG AAGAGAACGT AAATTGAATT AATTTTCCTA CACAAATTGG GTACGGTTAA GTCAAGACTT
GGGCCAGTGT TAGTATTCAT GGACATAGGG TTGGCACCTA AATTTGACCA AGTGGCCTAC TCCACCGTAA ATGATTAAAT
GCGCCGAGAT TAATTTTTGT GCCCTAAATT CCAAGAAACC AAGGCATTGA CACGCGTCAA GGCATCGGCA TCTTTGTGTG
GATGTAAATT GACAATCACA GAAGTTTCTC AAAAGTCGAA GAAGGATAGG TTGTCGTTTT AGCACAAAAG CTTTTGTATT
TTTCTTCCTA TTCAGCTGTC GATTATTGGA ATCAGTACGA TTCCAATATT ATTATTTGAT ACATTTTATT CATCTCAAGA
AATTAGTGCA TTTTAGAGGA TAAATTGTTG TGATAATGTT AATAAATTAA TCATAAAGTT AATGAT

>Vigan.08G175900.01
ATGGGGCATT TTTCATCTGC GTTCAATAGG TTGGCAAAGT CCTTTGCAAC CAAGAGAAGT GGGAGTTCTG ATGGATGCAA
CGGAAGAGAA GCTGCGGAAG CAATGGCAAA GGAAGCCAAA AAAAATCACT TCATGTTGCA TAGCTCCGGC ACCATTAATG
TTGACGGTTC AGACAACTTT GCCTCACTTT TCTCCAAAAA AGGAAAGAAA GGAGTCAATC AGGATTGCTG CGTAGTATGG
GAAGAATTTG GGTGCCAAGA GGACATGATT TTCTGCGGGA TTTTTGACGG GCACGGGCCA TGGGGTCACT TTGTGGCCAA
GAGAGTAAGA GAGTCAATGC CACCATGTTT GCTATGCAAC TGGCAGGAGA CACTTTCCCA AACTTCACTT GATCCAGATG
TTGATGTTGA TATTACGGCA GAGAAAAAGC AACACCGGTT CAATATATGG AAGCACTCTT ACTTGAAGAC CTGTGCTGCC
ATTGATCGAG AACTAAAGCA GAATCGCAAG ATAGATTCAT TTTTCAGCGG AACAACTGCC CTGTCCATTG TTAGACAGGG
TGAATTAATT GTAATTGCAA ACGTTGGTGA CTCTCGCGCC GTGTTAGCCA CAGCATCAGA TGATGGAAGT TTGGTAGCAG
TTCAGTTGAC AGTAGATTTC AAGCCCAGTT TACCTCAGGA AGCGGAGAGA ATAGTGGAGT GCAAAGGACG AGTTTTCTGC
TTGGAAGACG AGCCTGGGGT GTACAGGGTG TGGTTACCGG AGGAGGAGTC ACCAGGACTT GCCATGTCAA GGGCTTTTGG
TGACTACTGC GTCAAAGAGT ATGGTCTTAT TTCAGTGCCT GAAGTAACAC ACAGGAACAT AACCAGCAAA GACCAGTTTG
TTGTACTAGC CACTGATGGG GTGTGGGATG TAATCTCCAA TCAAGAAGCA GTGGATATTG TGCGTTCAAC AGCAGACAGA
ACAGAGTCTG CGAAACATTT GGTGGAGTGT GCGATGCGTG CATGGAAACG CAAGAGGAGG GGCATTGCAA TGGACGATAT
TTCAGCTATT TGTCTCTTCT TTCACTCTTC ACCATCACTT CACCAAGTTC ATGCCACCCT AGAATAG

>Vigan.08G175900.01
MGHFSSAFNR LAKSFATKRS GSSDGCNGRE AAEAMAKEAK KNHFMLHSSG TINVDGSDNF ASLFSKKGKK GVNQDCCVVW
EEFGCQEDMI FCGIFDGHGP WGHFVAKRVR ESMPPCLLCN WQETLSQTSL DPDVDVDITA EKKQHRFNIW KHSYLKTCAA
IDRELKQNRK IDSFFSGTTA LSIVRQGELI VIANVGDSRA VLATASDDGS LVAVQLTVDF KPSLPQEAER IVECKGRVFC
LEDEPGVYRV WLPEEESPGL AMSRAFGDYC VKEYGLISVP EVTHRNITSK DQFVVLATDG VWDVISNQEA VDIVRSTADR
TESAKHLVEC AMRAWKRKRR GIAMDDISAI CLFFHSSPSL HQVHATLE*