GBrowse Details

Vigan.08G176100.01

Basic Information:
Name: Vigan.08G176100.01
Multiple alignment
Variant Information
Position: Chr08:15716029..15719094 (+ strand)
Length: 3066
Functional Information:
Description: Similar to Uncharacterized protein. [I1NJ40, Glycine max]
InterPro: Pre-mRNA-splicing factor 38 (IPR005037)
Pre-mRNA-splicing factor 38, C-terminal (IPR024767)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:311.67,176.69,45.97,65.56,54.24,63.57,56.04,48.31
Arabidopsis thaliana homolog: AT2G40650.1
Automatic updates:
Name: NM_001255546 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pre-mRNA-splicing factor 38A-like (LOC100792466), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:15716029..15716124 (+ strand)
Length: 96
Type: five_prime_UTR
Position: Chr08:15716125..15716536 (+ strand)
Length: 412
Type: CDS
Position: Chr08:15716632..15716722 (+ strand)
Length: 91
Type: CDS
Position: Chr08:15716832..15716961 (+ strand)
Length: 130
Type: CDS
Position: Chr08:15717077..15717147 (+ strand)
Length: 71
Type: CDS
Position: Chr08:15718275..15718737 (+ strand)
Length: 463
Type: CDS
Position: Chr08:15718738..15719094 (+ strand)
Length: 357
Type: three_prime_UTR


>Vigan.08G176100.01
CATCAATCTT TCTTAGTCCT GGACCTGATC CTGAAAAGGG TTAGGGTTAG GGTTTGTGCT ATTGAATTCC AGGGACGGTG
CATTTCTGCT TAATCGATGG CGAATCGCAC GGATCCTGCA GCGAAGAGTA TAAGAGGGAC GAACCCTCAG AACCTAGTGG
AGAAGATTCT CCGGTCGAAG ATCTATCAGA ACACGTACTG GAAGGAGCAA TGTTTCGGGT TAACGGCGGA GACGTTGGTG
GACAAGGCCA TGGAGCTGGA CCATCTCGGC GGAACTTACG GGGGAAACCG TAAACCTACG CCTTTCATGT GCCTCGTCAT
GAAGATGCTC CAGATTCAGC CAGAGAAAGA AATCGTCATC GAGTTCATCA AGAACGAGGA TTACAAATAC GTTAGGATAC
TCGGCGCGTT TTACTTGCGT CTCACTGGCT CAGACATTGA CGTCTACCGC TACCTCGAAC CCTTGTACAA TGACTATCGC
AAACTCCGGC GAAAGTTAAC TGATGGGCAG TTTTCATTGA CGCATGTGGA TGAGGTCATC GATGAACTTC TCACAAAAGA
TTATTCCTGT GATATTGCTT TGCCTCGCGT CAAGAAAAGA TGGACTCTTG AATCTTTGAA TTCATTGGAA CCTAGACGAA
GCGCACTTGA AGAAGATTTT GAGGAGGAAG AAGAGAAAGA GGATAATGAG CAACCTGTTG ACGAGATTGA AGATAGAGCC
TATGAGAAGG ATTATTATCG TGGGCGAAGC CCAACAAGGG AAAGAGACAG GGACAGAAGG CGTGATAGTC ATAGATACAG
GGACCGTGAC TATGACAGAG ACTATGATAG AGATTATGAA CGAGAGCATG ATCGGGAGCG GGGACGCGGC AGAGATAGAG
ACAGGGACAG AGACAGGGAG AGAGACAGGG ATCGATATCG TCTGAGGGAT GAAAAAGATT ATGGTCGTGA GAGAGAAGGT
AGGGAGCGGG AGAGGAGAGA GAGGGATCGT GACCGTGGAA GGCGAAGGAG CCACTCAAGG AGTCGAAGTA GGAGTAGGGA
TCGCAAGGAA CATGATGGTG GTGACTACAG AAAGAGACAT GCTAGAAGTA GTGTAAGCCC TAGAAGACAC GGAGATGGAC
TTGAGGATGG TGAGCCAAAA AAGAAGAAGG AGAAAAAAGA AAAGAAAGAA AAGAAGGATG ATGGCACTGA TCACCCAGAT
CCTGAGATTG CAGAAGCGAA CAAGCTCCGA GCAGCCCTGG GTTTGAAACC GCTGAAGGTC TGATCTGGGC AGTGTGATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT TTAGTTGGGT TTTGTTGTAA GCACTAAAGA TCCAAAAGCA
AAAGGAAATG CCATGTTACC AGGTGGCTAG ATGCTGCTTG CTTTCTGTGT ATATCCCTGA GTCGCAGTTA TCGAGTCAAA
AGGACAAGTT TGCTATGTAC GTGTGTTTGT GTTGCTGCGC CAGCTCGAAC TTATACATGT CCATAGGTCT TGTTTTGATT
GTTTTTATTT TAATGAGACC ACCATATCCA GAGCCTCCGG TATGAAATTT TCACTACAGA AACTTTTAGC AGCCTTGTTT
CAATCATATT TATAGGTTGA 

>Vigan.08G176100.01
ATGGCGAATC GCACGGATCC TGCAGCGAAG AGTATAAGAG GGACGAACCC TCAGAACCTA GTGGAGAAGA TTCTCCGGTC
GAAGATCTAT CAGAACACGT ACTGGAAGGA GCAATGTTTC GGGTTAACGG CGGAGACGTT GGTGGACAAG GCCATGGAGC
TGGACCATCT CGGCGGAACT TACGGGGGAA ACCGTAAACC TACGCCTTTC ATGTGCCTCG TCATGAAGAT GCTCCAGATT
CAGCCAGAGA AAGAAATCGT CATCGAGTTC ATCAAGAACG AGGATTACAA ATACGTTAGG ATACTCGGCG CGTTTTACTT
GCGTCTCACT GGCTCAGACA TTGACGTCTA CCGCTACCTC GAACCCTTGT ACAATGACTA TCGCAAACTC CGGCGAAAGT
TAACTGATGG GCAGTTTTCA TTGACGCATG TGGATGAGGT CATCGATGAA CTTCTCACAA AAGATTATTC CTGTGATATT
GCTTTGCCTC GCGTCAAGAA AAGATGGACT CTTGAATCTT TGAATTCATT GGAACCTAGA CGAAGCGCAC TTGAAGAAGA
TTTTGAGGAG GAAGAAGAGA AAGAGGATAA TGAGCAACCT GTTGACGAGA TTGAAGATAG AGCCTATGAG AAGGATTATT
ATCGTGGGCG AAGCCCAACA AGGGAAAGAG ACAGGGACAG AAGGCGTGAT AGTCATAGAT ACAGGGACCG TGACTATGAC
AGAGACTATG ATAGAGATTA TGAACGAGAG CATGATCGGG AGCGGGGACG CGGCAGAGAT AGAGACAGGG ACAGAGACAG
GGAGAGAGAC AGGGATCGAT ATCGTCTGAG GGATGAAAAA GATTATGGTC GTGAGAGAGA AGGTAGGGAG CGGGAGAGGA
GAGAGAGGGA TCGTGACCGT GGAAGGCGAA GGAGCCACTC AAGGAGTCGA AGTAGGAGTA GGGATCGCAA GGAACATGAT
GGTGGTGACT ACAGAAAGAG ACATGCTAGA AGTAGTGTAA GCCCTAGAAG ACACGGAGAT GGACTTGAGG ATGGTGAGCC
AAAAAAGAAG AAGGAGAAAA AAGAAAAGAA AGAAAAGAAG GATGATGGCA CTGATCACCC AGATCCTGAG ATTGCAGAAG
CGAACAAGCT CCGAGCAGCC CTGGGTTTGA AACCGCTGAA GGTCTGA

>Vigan.08G176100.01
MANRTDPAAK SIRGTNPQNL VEKILRSKIY QNTYWKEQCF GLTAETLVDK AMELDHLGGT YGGNRKPTPF MCLVMKMLQI
QPEKEIVIEF IKNEDYKYVR ILGAFYLRLT GSDIDVYRYL EPLYNDYRKL RRKLTDGQFS LTHVDEVIDE LLTKDYSCDI
ALPRVKKRWT LESLNSLEPR RSALEEDFEE EEEKEDNEQP VDEIEDRAYE KDYYRGRSPT RERDRDRRRD SHRYRDRDYD
RDYDRDYERE HDRERGRGRD RDRDRDRERD RDRYRLRDEK DYGREREGRE RERRERDRDR GRRRSHSRSR SRSRDRKEHD
GGDYRKRHAR SSVSPRRHGD GLEDGEPKKK KEKKEKKEKK DDGTDHPDPE IAEANKLRAA LGLKPLKV*