GBrowse Details

Vigan.08G181400.01

Basic Information:
Name: Vigan.08G181400.01
Multiple alignment
Variant Information
Position: Chr08:16127482..16129026 (+ strand)
Length: 1545
Functional Information:
Description: Similar to Galactinol synthase. [Q7XZ08, Glycine max]
GO: Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757)
InterPro: Glycosyl transferase, family 8 (IPR002495)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.61,28.31,1.65,4.59,0.05,0.63,0.35,4.37
Arabidopsis thaliana homolog: AT1G56600.1, AT2G47180.1
Automatic updates:
Name: NM_001251098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max galactinol synthase (GOLS), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:16127482..16127562 (+ strand)
Length: 81
Type: five_prime_UTR
Position: Chr08:16127563..16127895 (+ strand)
Length: 333
Type: CDS
Position: Chr08:16127993..16128313 (+ strand)
Length: 321
Type: CDS
Position: Chr08:16128396..16128530 (+ strand)
Length: 135
Type: CDS
Position: Chr08:16128617..16128814 (+ strand)
Length: 198
Type: CDS
Position: Chr08:16128815..16129026 (+ strand)
Length: 212
Type: three_prime_UTR


>Vigan.08G181400.01
AACAAACCAA GATCTTCCTT GCAACTTTCC AGTGTCCTGT CTAAAATATC CTTCAAGCAA GTAAAACTAC TCACTGAGAC
CATGGCCCCT GTCATGACCA CCGTGGAAGC CAATCTCACC AAAGCAGAAG CTAAATCCGC CGAAGGTGTT GACCGTGCCT
ACGTGACCTT CCTTGCTGGA AACGGTGACT ATGTAAAAGG TGTGGTTGGG TTGGCGAAAG GTCTGAGGAA GGTGAAGAGC
ATGTACCCTC TGGTGGTAGC AATGCTACCG GATGTTCCCG AAGAGCATCG CAACATTCTC ATCAACCAAG GCTGCATTGT
TAGAGAGATT GAGCCCGTGT ACCCTCCAGA AAACCAAACC CAGTTTGCCA TGGCATATTA TGTCATCAAC TACTCCAAGC
TAAGAATTTG GGAGTTTGTG GAATACTCTA AGATGATTTA CCTAGATGGT GATATCCAAG TGTTTGACAA CATCGACCAC
TTGTTCGACT TGCCTGACAA CTACTTGTAT GCGGTGAAGG ACTGTTTCTG TGAAGCCACC TGGGCCCACA CTCCACAGTA
TGGGATCGGG TACTGCCAGC AGTGCCCCGA CAAGGTTCAG TGGCCCGCCA ACCTTGGGCC CAAGCCTCCT CTCTATTTCA
ACGCTGGGAT GTTTGTTTAC CAGCCCAATC TGGCTACCTA CAAGGACCTT CTTCAAACAG TTCAAGTCAC CAAGCCCACT
TCCTTTGCTG AACAAGATTT TCTGAACATG TACTTCAAGG GTAAGTATAA GCCAATTTCC AATATGTACA ATCTTGTGCT
GGCCATGTTA TGGCGTCACC CTGAGAATGT TGAGCTTGAA AAAGTTAAAG TGGTTCACTA CTGTGCTGCG GGATCAAAGC
CTTGGAGGTA CAGTGAAAAA GAGGAGAATA TGCAGAGAGA AGATATAAAG ATGTTAGTGA AGAAGTGGTG GGATATATAT
GAGGATGAGA CTTTGGATTA TAACTATTCA CTCAATGCAG AAAGGTTCAC TGAGACGCTT TTAGAGGGTG GCGAACTCAA
TTACGTTCCT GCTCCATCTG CTGCTTAAAG TGTTTTTGCT TCCATATACT ATATTTAAGA CTCGTAGATC ATTAAGTTTT
ATGGATTTGT AGTTGAGAGG ACCCTTTTTG TGTGTCCTTT TTCATATATT TTTCTTTTTT TTCAACTAGT ATAACCAGAT
TGGTGTGATA GGATTTTACA TTACATGATT CACATACTTT TCTTCTTATA CACTACTTAT TCCGTTGGTG TGTGAAAAAA


>Vigan.08G181400.01
ATGGCCCCTG TCATGACCAC CGTGGAAGCC AATCTCACCA AAGCAGAAGC TAAATCCGCC GAAGGTGTTG ACCGTGCCTA
CGTGACCTTC CTTGCTGGAA ACGGTGACTA TGTAAAAGGT GTGGTTGGGT TGGCGAAAGG TCTGAGGAAG GTGAAGAGCA
TGTACCCTCT GGTGGTAGCA ATGCTACCGG ATGTTCCCGA AGAGCATCGC AACATTCTCA TCAACCAAGG CTGCATTGTT
AGAGAGATTG AGCCCGTGTA CCCTCCAGAA AACCAAACCC AGTTTGCCAT GGCATATTAT GTCATCAACT ACTCCAAGCT
AAGAATTTGG GAGTTTGTGG AATACTCTAA GATGATTTAC CTAGATGGTG ATATCCAAGT GTTTGACAAC ATCGACCACT
TGTTCGACTT GCCTGACAAC TACTTGTATG CGGTGAAGGA CTGTTTCTGT GAAGCCACCT GGGCCCACAC TCCACAGTAT
GGGATCGGGT ACTGCCAGCA GTGCCCCGAC AAGGTTCAGT GGCCCGCCAA CCTTGGGCCC AAGCCTCCTC TCTATTTCAA
CGCTGGGATG TTTGTTTACC AGCCCAATCT GGCTACCTAC AAGGACCTTC TTCAAACAGT TCAAGTCACC AAGCCCACTT
CCTTTGCTGA ACAAGATTTT CTGAACATGT ACTTCAAGGG TAAGTATAAG CCAATTTCCA ATATGTACAA TCTTGTGCTG
GCCATGTTAT GGCGTCACCC TGAGAATGTT GAGCTTGAAA AAGTTAAAGT GGTTCACTAC TGTGCTGCGG GATCAAAGCC
TTGGAGGTAC AGTGAAAAAG AGGAGAATAT GCAGAGAGAA GATATAAAGA TGTTAGTGAA GAAGTGGTGG GATATATATG
AGGATGAGAC TTTGGATTAT AACTATTCAC TCAATGCAGA AAGGTTCACT GAGACGCTTT TAGAGGGTGG CGAACTCAAT
TACGTTCCTG CTCCATCTGC TGCTTAA

>Vigan.08G181400.01
MAPVMTTVEA NLTKAEAKSA EGVDRAYVTF LAGNGDYVKG VVGLAKGLRK VKSMYPLVVA MLPDVPEEHR NILINQGCIV
REIEPVYPPE NQTQFAMAYY VINYSKLRIW EFVEYSKMIY LDGDIQVFDN IDHLFDLPDN YLYAVKDCFC EATWAHTPQY
GIGYCQQCPD KVQWPANLGP KPPLYFNAGM FVYQPNLATY KDLLQTVQVT KPTSFAEQDF LNMYFKGKYK PISNMYNLVL
AMLWRHPENV ELEKVKVVHY CAAGSKPWRY SEKEENMQRE DIKMLVKKWW DIYEDETLDY NYSLNAERFT ETLLEGGELN
YVPAPSAA*