VIGGS:GBrowse

Vigan.08G186700.01

Basic Information:

Name:	Vigan.08G186700.01 Multiple alignment Variant Information
Position:	Chr08:16555532..16557324 (+ strand)
Length:	1793

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LAX5, Glycine max]
GO:	Molecular Function: manganese ion binding (GO:0030145)
GO:	Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro:	Germin (IPR001929)
	Cupin 1 (IPR006045)
	RmlC-like cupin domain (IPR011051)
	RmlC-like jelly roll fold (IPR014710)
	Germin, manganese binding site (IPR019780)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:1.63,0.61,10.63,5.41,1.00,8.67,13.03,30.66

Automatic updates:

Name:	NM_001252805 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max germin-like protein (GER19), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:16555532..16555652 (+ strand)
Length:	121
Type:	five_prime_UTR

Position:	Chr08:16555653..16555761 (+ strand)
Length:	109
Type:	CDS

Position:	Chr08:16556406..16556950 (+ strand)
Length:	545
Type:	CDS

Position:	Chr08:16556951..16557324 (+ strand)
Length:	374
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G186700.01
CTGTGATGCT ATAAATATTA GTGTTCATCA TCCCAACACT TTCCAACTAC CAACTACTTT GCCTTCTTCT TTTTCCATTT
CCATTTCCAT TTTCTTAACT TATTCCCTTC AAAATTATAT TATGGCTAAC CACACTATGA AGCTGCTCAA CTTGCTTCTT
CTCTTAGCCA CCACCGTCTC ATCAGATCCT GACCTTCTTC AAGACCTCTG TGTCGCTGAC CTCTCCTCAG GTGTGAAAGT
GAATGGATTC AGCTGCAAAG AAGCATCTAA GATAAATGCC TCAGATTTCT TCTCGAACAT ACTAGGAAAA GCAGGATCCA
CCAACAACAC CTTTGGGTCA ATAGTGACTG GAGCGAATGT TGAGAAAGTC CCAGGACTGA ACACACTTGG TGTGTCTCTG
TCAAGAATTG ACTATGCCCC AGATGGCATA AACCCTCCTC ACACTCACCC TCGTGCCACT GAGATTGTCT TTGTGCTTGA
AGGCCAACTA GATGTAGGCT TCATAACCAC TTCCAATCTC CTCATATCAA AGACCATTAG CAAGGGTGAC ATATTTGTCT
TTCCAAAAGG CTTGCTTCAC TTCCAACAGA ACAATGCCAA CGTCCCTGCT GCTGTCATTT CAGCCTTCAA CAGCCAACTT
CCAGGGACAC AGTCAATTGC TACAACCTTG TTTTCTGCCA CACCTTCACT TCCCGACCAT GTCTTGACCA AGACCTTCCA
GGTTGGTACC AAAGTCGTTC AGAAAATCAA GTCCAGGCTT GCACCTAAGA AGTAAAAACT GCTACATTGG TTCGGCTATC
TTGTGTCTTC TCAACAATAA ATACTCCTTA TTCATTCTTT CTGAAAATTT CAAAACCATT ATCATATAAT GTGAAGATAA
ATTAAAACTG CTTATTCTAT AAAGATTGAT CCAGATAGCT AATTGTTTCT CTTTCTCCAT TTTCTTTATC ATCTCTTCTT
TTAATCTTTT GTCATTCACC TTACATTTCG TGGTTGGAAC AACTCATAAA TTTGTTTAAT AGTTTAAATT TGAAAGATCT
TGCATTTCCG GTTATTAGTG TATAACATAA TCTTCGATCT AAACCTCAAA GTCATAGGTC TATGACTTCT TCCGTGTAAA
TTGTTCTTGT TTATGACGTT CCTTTGCTT

[show][hide][copy]CDS

>Vigan.08G186700.01
ATGGCTAACC ACACTATGAA GCTGCTCAAC TTGCTTCTTC TCTTAGCCAC CACCGTCTCA TCAGATCCTG ACCTTCTTCA
AGACCTCTGT GTCGCTGACC TCTCCTCAGG TGTGAAAGTG AATGGATTCA GCTGCAAAGA AGCATCTAAG ATAAATGCCT
CAGATTTCTT CTCGAACATA CTAGGAAAAG CAGGATCCAC CAACAACACC TTTGGGTCAA TAGTGACTGG AGCGAATGTT
GAGAAAGTCC CAGGACTGAA CACACTTGGT GTGTCTCTGT CAAGAATTGA CTATGCCCCA GATGGCATAA ACCCTCCTCA
CACTCACCCT CGTGCCACTG AGATTGTCTT TGTGCTTGAA GGCCAACTAG ATGTAGGCTT CATAACCACT TCCAATCTCC
TCATATCAAA GACCATTAGC AAGGGTGACA TATTTGTCTT TCCAAAAGGC TTGCTTCACT TCCAACAGAA CAATGCCAAC
GTCCCTGCTG CTGTCATTTC AGCCTTCAAC AGCCAACTTC CAGGGACACA GTCAATTGCT ACAACCTTGT TTTCTGCCAC
ACCTTCACTT CCCGACCATG TCTTGACCAA GACCTTCCAG GTTGGTACCA AAGTCGTTCA GAAAATCAAG TCCAGGCTTG
CACCTAAGAA GTAA

[show][hide][copy]PROTEIN

>Vigan.08G186700.01
MANHTMKLLN LLLLLATTVS SDPDLLQDLC VADLSSGVKV NGFSCKEASK INASDFFSNI LGKAGSTNNT FGSIVTGANV
EKVPGLNTLG VSLSRIDYAP DGINPPHTHP RATEIVFVLE GQLDVGFITT SNLLISKTIS KGDIFVFPKG LLHFQQNNAN
VPAAVISAFN SQLPGTQSIA TTLFSATPSL PDHVLTKTFQ VGTKVVQKIK SRLAPKK*