GBrowse Details

Vigan.08G187400.01

Basic Information:
Name: Vigan.08G187400.01
Multiple alignment
Variant Information
Position: Chr08:16623359..16627430 (- strand)
Length: 4072
Functional Information:
Description: Similar to Eukaryotic translation initiation factor 3 subunit M. [V7BGT1, Phaseolus vulgaris]
GO: Cellular Component: cytoplasm (GO:0005737)
Cellular Component: eukaryotic translation initiation factor 3 complex (GO:0005852)
Molecular Function: translation initiation factor activity (GO:0003743)
Molecular Function: protein binding (GO:0005515)
InterPro: Proteasome component (PCI) domain (IPR000717)
Winged helix-turn-helix DNA-binding domain (IPR011991)
Eukaryotic translation initiation factor 3 subunit M (IPR027528)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.43,64.44,49.15,50.75,76.13,57.69,62.57,48.95
Arabidopsis thaliana homolog: AT3G02200.2, AT5G15610.1
Automatic updates:
Name: NM_001255021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 3 subunit M-like (LOC100786194), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255618 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max eukaryotic translation initiation factor 3 subunit M-like (LOC100788645), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:16623359..16623715 (- strand)
Length: 357
Type: three_prime_UTR
Position: Chr08:16623716..16623805 (- strand)
Length: 90
Type: CDS
Position: Chr08:16624342..16624411 (- strand)
Length: 70
Type: CDS
Position: Chr08:16624571..16624668 (- strand)
Length: 98
Type: CDS
Position: Chr08:16624747..16624856 (- strand)
Length: 110
Type: CDS
Position: Chr08:16624957..16625107 (- strand)
Length: 151
Type: CDS
Position: Chr08:16625523..16625661 (- strand)
Length: 139
Type: CDS
Position: Chr08:16625793..16626005 (- strand)
Length: 213
Type: CDS
Position: Chr08:16626099..16626237 (- strand)
Length: 139
Type: CDS
Position: Chr08:16626543..16626672 (- strand)
Length: 130
Type: CDS
Position: Chr08:16627264..16627356 (- strand)
Length: 93
Type: CDS
Position: Chr08:16627357..16627430 (- strand)
Length: 74
Type: five_prime_UTR


>Vigan.08G187400.01
GGGTTTTATT TGCTCACACC TTCTTCTCCG CAGCGCGAGT CAGCTAGGGT TTACAATATC GCAGTTCAGA AAACATGGCG
ACCGTGGTGC CAACCTCCGA AGAAGACGCT GCCCTCACCG TCGTTCGATT CGCCTCTGAA CTTGCCTGGG CTGATGCCGG
TCCTGAGGTT GCTGAGCCAC AAGTTAGTAG ACTCTGCATG GAGGCTGAAG AGTTCATTGG TATGGGAAAG TGGTTGGAGT
TAGCATCATT GATGATTACC TCTGCTGAAT TGATTTTCTC TAAGGTTTCT GAAAAAGATA TAGAGTCCAT CTTCACTATC
ATTTGCAATC TTGTTACAAA GACTGCGAAT CCAGATGAAG CAATGGAGAT TGTAAAAGTT GTAACTGCAA AAATACTTCA
GCAGCCAAAC GAAAAGCCTG TTGTGCGATT GAAAATTTTG ATCAATCTGT ACAATCTTTT GGAGACTCCA TACTGCCAGT
TTTATGTTTA CATGAAGACA CTGAATTTAG CTGTTGATGG GAAAGTCACT GAATTCATTA TACCTTCATT CAAAAAAATT
GACAACTTTT TGAAAGACTG GAAAATCGGG ATACCGGAAC AGAGAGAGCT CTTTCTTGCT ATTTCTAATA TTTTGAAGGA
AAATAAAAGT ATGTCAAAGG ATGCTTTAAA GTTCCTGACC AGTTATCTGG CAACTTTTTT GGGAGAAGAT GCCCATGTTT
TGAGTGAAGC CAAGGAGGAG GGTGCACATG CAATTGTGGA ATTTGTTAGG GCTCCTGACA TCTTTCAGTG TGATTTACTA
GACTTGCCGG CTGTTGCTCA ACTGGAGAAG GATGCCAAAT ATGGTTTGTT ATATGAGCTT CTTAAGATTT TTGTTACTCA
GAGGCTGGAT GCTTACTTAG AATATCATGC TACAAATTCC ACCTTGTTGA AAACTTATGG CCTTGTACAT GAAGAATGCA
TTGCTAAAAT GAGGCTGATG TCATTGGTGG ATCTTAGCTC CGATGCATCT GGCACCATTC CTTATGAACT TATCAGGGAC
ACACTTCAGA TCAATGATGA TGAGGTGGAA CTGTGGGTGG TTAGAGCAAT AACTGCCAAG TTAATTGACT GTAAGTTGGA
TCAAATGAAT CAAGTAGTGG TTGTTAGTCA TCCTACTGAT CGTGTGTTTG GTCAGCATCA ATGGCAGGCA CTGAGAACAA
AGCTGGTGAC ATGGAGGGGA AATGTTGCGA ATGTTATCAG TACCATTCAG GCCAACAAAA TAACGGAAGA TGGGCCCCAG
GCTGCCCAAG GGTTGGTAGC TCGGTGAGGA CGTTTTCGAG TGAAGCAATC AGCCGAGTAT CTAGATTTTA TCCAAGTGGA
ATTTTTTGAT CTTAAAAACT GTAATTTGTT TTGTTACAAA TTCATAAATT TATTTTAGTT GACTACTGAC TCTAATTGTA
CTACCCAACT TTGGGAGAGA GCTATTATTA TTGAATTTTA TGTTTTGTTG ACCTGCCTCA CCATTTCGTC GAGGATATTC
TCCCAGTACT TCGAACGAAC AACTAATCTA AAGTTGTCTC CGCTAAAAAT TGTGCAATGA GTGCTCTCAT GGGAGCTTTC
ACCTTAAGTT TTATTGATTG TACATCATAG CTAGAGTGAA ACTCCGAATT TGCGGTCTTA TCTT

>Vigan.08G187400.01
ATGGCGACCG TGGTGCCAAC CTCCGAAGAA GACGCTGCCC TCACCGTCGT TCGATTCGCC TCTGAACTTG CCTGGGCTGA
TGCCGGTCCT GAGGTTGCTG AGCCACAAGT TAGTAGACTC TGCATGGAGG CTGAAGAGTT CATTGGTATG GGAAAGTGGT
TGGAGTTAGC ATCATTGATG ATTACCTCTG CTGAATTGAT TTTCTCTAAG GTTTCTGAAA AAGATATAGA GTCCATCTTC
ACTATCATTT GCAATCTTGT TACAAAGACT GCGAATCCAG ATGAAGCAAT GGAGATTGTA AAAGTTGTAA CTGCAAAAAT
ACTTCAGCAG CCAAACGAAA AGCCTGTTGT GCGATTGAAA ATTTTGATCA ATCTGTACAA TCTTTTGGAG ACTCCATACT
GCCAGTTTTA TGTTTACATG AAGACACTGA ATTTAGCTGT TGATGGGAAA GTCACTGAAT TCATTATACC TTCATTCAAA
AAAATTGACA ACTTTTTGAA AGACTGGAAA ATCGGGATAC CGGAACAGAG AGAGCTCTTT CTTGCTATTT CTAATATTTT
GAAGGAAAAT AAAAGTATGT CAAAGGATGC TTTAAAGTTC CTGACCAGTT ATCTGGCAAC TTTTTTGGGA GAAGATGCCC
ATGTTTTGAG TGAAGCCAAG GAGGAGGGTG CACATGCAAT TGTGGAATTT GTTAGGGCTC CTGACATCTT TCAGTGTGAT
TTACTAGACT TGCCGGCTGT TGCTCAACTG GAGAAGGATG CCAAATATGG TTTGTTATAT GAGCTTCTTA AGATTTTTGT
TACTCAGAGG CTGGATGCTT ACTTAGAATA TCATGCTACA AATTCCACCT TGTTGAAAAC TTATGGCCTT GTACATGAAG
AATGCATTGC TAAAATGAGG CTGATGTCAT TGGTGGATCT TAGCTCCGAT GCATCTGGCA CCATTCCTTA TGAACTTATC
AGGGACACAC TTCAGATCAA TGATGATGAG GTGGAACTGT GGGTGGTTAG AGCAATAACT GCCAAGTTAA TTGACTGTAA
GTTGGATCAA ATGAATCAAG TAGTGGTTGT TAGTCATCCT ACTGATCGTG TGTTTGGTCA GCATCAATGG CAGGCACTGA
GAACAAAGCT GGTGACATGG AGGGGAAATG TTGCGAATGT TATCAGTACC ATTCAGGCCA ACAAAATAAC GGAAGATGGG
CCCCAGGCTG CCCAAGGGTT GGTAGCTCGG TGA

>Vigan.08G187400.01
MATVVPTSEE DAALTVVRFA SELAWADAGP EVAEPQVSRL CMEAEEFIGM GKWLELASLM ITSAELIFSK VSEKDIESIF
TIICNLVTKT ANPDEAMEIV KVVTAKILQQ PNEKPVVRLK ILINLYNLLE TPYCQFYVYM KTLNLAVDGK VTEFIIPSFK
KIDNFLKDWK IGIPEQRELF LAISNILKEN KSMSKDALKF LTSYLATFLG EDAHVLSEAK EEGAHAIVEF VRAPDIFQCD
LLDLPAVAQL EKDAKYGLLY ELLKIFVTQR LDAYLEYHAT NSTLLKTYGL VHEECIAKMR LMSLVDLSSD ASGTIPYELI
RDTLQINDDE VELWVVRAIT AKLIDCKLDQ MNQVVVVSHP TDRVFGQHQW QALRTKLVTW RGNVANVIST IQANKITEDG
PQAAQGLVAR *