VIGGS:GBrowse

Vigan.08G187800.01

Basic Information:

Name:	Vigan.08G187800.01 Multiple alignment Variant Information
Position:	Chr08:16648679..16649850 (- strand)
Length:	1172

Functional Information:

Description:	Similar to Uncharacterized protein. [C7S8D1, Glycine max]
GO:	Molecular Function: manganese ion binding (GO:0030145)
GO:	Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro:	Germin (IPR001929)
	Cupin 1 (IPR006045)
	RmlC-like cupin domain (IPR011051)
	RmlC-like jelly roll fold (IPR014710)
	Germin, manganese binding site (IPR019780)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.11,0.69,20.01,21.01,10.40,90.14,42.99,188.16
Arabidopsis thaliana homolog:	AT3G62020.1

Automatic updates:

Name:	NM_001248827 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499768 (LOC100499768), mRNA.
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001254649 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cupin family protein (GMCUPIN10.4), mRNA.
PubMed ID:	25360675 NCBI(pubmed)
PubMed ID:	21059215 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:16648679..16648960 (- strand)
Length:	282
Type:	three_prime_UTR

Position:	Chr08:16648961..16649508 (- strand)
Length:	548
Type:	CDS

Position:	Chr08:16649643..16649757 (- strand)
Length:	115
Type:	CDS

Position:	Chr08:16649758..16649850 (- strand)
Length:	93
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G187800.01
AAACATTCCA CTATTATCTC TAATCATATC AAAAATACCT TTCTCTAACG CTTACTCTTG CAAATAGTTC AATCATCATT
CCAAGTCCAA ACCATGTTGC CAACAAACAC TTATGCAATT TTTGTCATCT TCTGTTGTGC CTTCTCCTTT GCCTTCGCTT
CTGACCCTGA CACACTTCAA GACCTTTGTG TCGCACTTCC CTCTTCAGGT GTGAAGGTGA ATGGTTTTGC CTGCAAGGCA
GAGACGAATG TGACAGAAGC TGATTTCTTC TTTGCTGGTT TAGCCAAACC TGGAGTTATC AACAACACAT TGGGATCTTT
GGTTACTGCA GCCAATGTAG AAAAAATTCC AGGACTTAAC ACATTGGGAG TGTCTTTCTC TAGAATAGAC TATAAAGCTG
GGGGACTTAA CCCACCTCAC ACACACCCTC GTGCCACTGA GATTGTGTTT GTGTTAGAAG GTCAATTAGA CGTGGGGTTT
ATCACCACAG CCAACAAACT CATCTCAAAG TCCATTAAGA AAGGTGAAAT CTTTGTGTTC CCTAAAGGTT TGGTGCATTA
TCAGAAGAAC AGTGGAGATA AGCCTGCTTC AGTGCTTTCT GCTTTCAACA GCCAACTTCC TGGAACCTTT TCTGTAGCTG
CAGCTCTTTT CAGCTCAACA CCAACTGTGC CTGATAATGT TCTTGCTCAG GCTTTTCAGA TTGATACTAA ACAGGTTGAT
GACATCAAGG CCAAGCTTGC TCCAAAGAAG AGTTAATTTC TTTTTTAAGT TAATTATGAT ATTCCAGAGA GAAAGATTCA
GTCTTATAAG CATATACTTT TCCGGTAATT CTTGAAGGTT TTGTGATTCA TTGTTTCACT TACGCTGTTG TTGTTCTCAG
TATGCGGCAT CGAGAATAAT GATATAATAT TGTATCGTGG ATTACATACT ACGTGGTTAT AGTGATACGA ACTCTATGAT
GTCAAAGTTG TCACCTTCTA TGTGGTTACG TATATTCATT TGAATCATTT TCTGGTTGAA TAATAAATAC ATTCGACA

[show][hide][copy]CDS

>Vigan.08G187800.01
ATGTTGCCAA CAAACACTTA TGCAATTTTT GTCATCTTCT GTTGTGCCTT CTCCTTTGCC TTCGCTTCTG ACCCTGACAC
ACTTCAAGAC CTTTGTGTCG CACTTCCCTC TTCAGGTGTG AAGGTGAATG GTTTTGCCTG CAAGGCAGAG ACGAATGTGA
CAGAAGCTGA TTTCTTCTTT GCTGGTTTAG CCAAACCTGG AGTTATCAAC AACACATTGG GATCTTTGGT TACTGCAGCC
AATGTAGAAA AAATTCCAGG ACTTAACACA TTGGGAGTGT CTTTCTCTAG AATAGACTAT AAAGCTGGGG GACTTAACCC
ACCTCACACA CACCCTCGTG CCACTGAGAT TGTGTTTGTG TTAGAAGGTC AATTAGACGT GGGGTTTATC ACCACAGCCA
ACAAACTCAT CTCAAAGTCC ATTAAGAAAG GTGAAATCTT TGTGTTCCCT AAAGGTTTGG TGCATTATCA GAAGAACAGT
GGAGATAAGC CTGCTTCAGT GCTTTCTGCT TTCAACAGCC AACTTCCTGG AACCTTTTCT GTAGCTGCAG CTCTTTTCAG
CTCAACACCA ACTGTGCCTG ATAATGTTCT TGCTCAGGCT TTTCAGATTG ATACTAAACA GGTTGATGAC ATCAAGGCCA
AGCTTGCTCC AAAGAAGAGT TAA

[show][hide][copy]PROTEIN

>Vigan.08G187800.01
MLPTNTYAIF VIFCCAFSFA FASDPDTLQD LCVALPSSGV KVNGFACKAE TNVTEADFFF AGLAKPGVIN NTLGSLVTAA
NVEKIPGLNT LGVSFSRIDY KAGGLNPPHT HPRATEIVFV LEGQLDVGFI TTANKLISKS IKKGEIFVFP KGLVHYQKNS
GDKPASVLSA FNSQLPGTFS VAAALFSSTP TVPDNVLAQA FQIDTKQVDD IKAKLAPKKS *