GBrowse Details

Vigan.08G192000.01

Basic Information:
Name: Vigan.08G192000.01
Multiple alignment
Variant Information
Position: Chr08:17042721..17044094 (+ strand)
Length: 1374
Functional Information:
Description: Similar to Autophagy-related protein. [M1VMT7, Vigna unguiculata]
InterPro: Autophagy protein Atg8 ubiquitin like (IPR004241)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:97.51,33.04,50.48,45.06,73.68,111.11,49.77,37.95
Arabidopsis thaliana homolog: AT3G15580.1
Automatic updates:
Name: NM_001249031 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATG8i protein (ATG8i), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251599 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UBQ superfamily protein (LOC100527345), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17042721..17042804 (+ strand)
Length: 84
Type: five_prime_UTR
Position: Chr08:17042805..17042844 (+ strand)
Length: 40
Type: CDS
Position: Chr08:17042979..17043034 (+ strand)
Length: 56
Type: CDS
Position: Chr08:17043280..17043332 (+ strand)
Length: 53
Type: CDS
Position: Chr08:17043499..17043617 (+ strand)
Length: 119
Type: CDS
Position: Chr08:17043709..17043809 (+ strand)
Length: 101
Type: CDS
Position: Chr08:17043810..17044094 (+ strand)
Length: 285
Type: three_prime_UTR


>Vigan.08G192000.01
GTTTAGGATT ATTGAAAGAA AGGGTTCGCA CCGTTCTTTC TCTCGTTCTC TCTCCAGTTG CTTCAGCTCC ACAACAACCT
AACAATGGGA GGAAGTTCAA GTTTCAGGGA TGAGTATACC TTCGAACAAA GGCTTGAACA ATCGCGAGAA ATTGTGGCCA
AATACCCCGA TCGAGTCCCC GTGATTGTGG AAAGATATGC CAAATGCGAT CTGCCTGAGT TGGAGAAGAA AAAATACCTC
GTTCCTCGAG ACTTGTCTGT TGGGCATTTC ATTCATATTT TGAGCTCCAG ACTTAGTCTG CCCCCGGGGA AAGCGCTCTT
TGTTTTTGTG AAGAATACCT TGCCGCAAAC TGCTAGTGTG ATGGACTCTG TCCACAGATC ATTCAAGGAT GAGGATGGAT
ATCTTTACAT GTATTATAGC ACTGAAAAAA CCTTTGGCTC GTACATAATG TAAACTGTTG CACCCTTTAC ACTATTATGT
CCAACTCTGA CTTTGTTATG TAACTACGAT CAAGAAAACC TTGTACAAAT TTGTTACATG GCATGGAACA TATCATTGAT
TGTTCTGTTC TGGATAACCT TGACAATACA ATAAGTAATG TATGATTTTT TGTTGGGTTT CTTTCAAGGA GATACACGAG
GAGATTTGGG ACATTAAGTT ATGAATAAAA CCTTCAACTG AACCTTACCT TAAGATGATA GTTTTGTGGA TATTTGCTCT
TGCATATTTT TATCCAAT

>Vigan.08G192000.01
ATGGGAGGAA GTTCAAGTTT CAGGGATGAG TATACCTTCG AACAAAGGCT TGAACAATCG CGAGAAATTG TGGCCAAATA
CCCCGATCGA GTCCCCGTGA TTGTGGAAAG ATATGCCAAA TGCGATCTGC CTGAGTTGGA GAAGAAAAAA TACCTCGTTC
CTCGAGACTT GTCTGTTGGG CATTTCATTC ATATTTTGAG CTCCAGACTT AGTCTGCCCC CGGGGAAAGC GCTCTTTGTT
TTTGTGAAGA ATACCTTGCC GCAAACTGCT AGTGTGATGG ACTCTGTCCA CAGATCATTC AAGGATGAGG ATGGATATCT
TTACATGTAT TATAGCACTG AAAAAACCTT TGGCTCGTAC ATAATGTAA

>Vigan.08G192000.01
MGGSSSFRDE YTFEQRLEQS REIVAKYPDR VPVIVERYAK CDLPELEKKK YLVPRDLSVG HFIHILSSRL SLPPGKALFV
FVKNTLPQTA SVMDSVHRSF KDEDGYLYMY YSTEKTFGSY IM*