VIGGS:GBrowse

Vigan.08G192500.01

Basic Information:

Name:	Vigan.08G192500.01 Multiple alignment Variant Information
Position:	Chr08:17073833..17076907 (- strand)
Length:	3075

Functional Information:

Description:	Similar to uncharacterized protein. [C6TAP0, Glycine max]
GO:	Biological Process: protein dephosphorylation (GO:0006470)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: protein serine/threonine phosphatase activity (GO:0004722)
InterPro:	Protein phosphatase 2C, manganese/magnesium aspartate binding site (IPR000222)
	Protein phosphatase 2C (PP2C)-like domain (IPR001932)
	Protein phosphatase 2C (IPR015655)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:28.84,19.33,11.28,23.81,14.36,10.12,16.70,17.06
Arabidopsis thaliana homolog:	AT3G62260.2

Automatic updates:

Name:	NM_001289252 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max probable protein phosphatase 2C 49-like (LOC100819791), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:17073833..17074112 (- strand)
Length:	280
Type:	three_prime_UTR

Position:	Chr08:17074113..17074689 (- strand)
Length:	577
Type:	CDS

Position:	Chr08:17075190..17075425 (- strand)
Length:	236
Type:	CDS

Position:	Chr08:17075502..17075699 (- strand)
Length:	198
Type:	CDS

Position:	Chr08:17076382..17076561 (- strand)
Length:	180
Type:	CDS

Position:	Chr08:17076562..17076907 (- strand)
Length:	346
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G192500.01
CAAGCCTCAA CGCGTGCGAG GCAAACACGC TTGTGGTCCC AGAAACTCCA CATGTCCGTG AAGCCAGCGA GGGTACCGGC
AGCCGCCGGT TCCAGAGTGG AGCCTCTAAT ATGGCGTTTC AACCCCTTCG TGGCAGAAGT TTTTGATCAC CAATCCCAAC
GGAAACCGCG AGAAAAATCC CCAGAAATCT CAACAGAAGA GAAAAAAATC GAAACAGTTT TGTAACATCA ATCAAGTATT
TTGGGAACAT AGCACAATAG TTTTCAGCTC TATACAACGT CGGATTCGGA TTTGGATCAG TTTTCCCGTG AGAAGTTTAG
AGGTGGAAAA AGAGAAAGCA CAGAACATGG TGGCTGAAGC AGAGGTTGTG TGTCAACAGA ACGTGGGTGT GTTGGATGTG
AAACATTTTC AAAACAAGGG AAGCGATGTC CCCGAGATCG GAGATGCAGA TACTAATTTG CCTCCGAGTT TTGACAGAGT
TCGTGTCACT GAGTTGGTCT CCGCCGAGTT ACTCACTTCA CAAGAAGATG CTAAGTCTGC AGACAGGATA TCGGATGCTG
CTCTTGAATC TGCGGTTCTG CAGTTTATAC CTTCCCTCCG TTCAGGTAGT TTTGCTGACA TTGGGCCAAG GAGATACATG
GAAGATGAAC ATATAAGGAT AGATGATTTG TCATCTCATA TGGGATCACC ATACAACTTT CCCAGACCAA GTGCTTTTTA
TGGGGTGTTT GATGGCCATG GAGGACCTGA AGCTGCAGCT TATATTAGAA AAAACGTCAT AAAGTTCTTC TTCGAAGATG
TCAGTTTCCC ACAGACTTCT GAAGTCAATA GTGTATTTCT GGAAGAGGTA GAGGATTCCC TCAGAAAGGC GTTTCTTTTG
GCTGATTCAG CTTTGGCCGA TGATTGCAGT GTGAATAGTT CATCAGGCAC CACGGCCCTC ACTGCTTTGA TATTTGGAAG
GCTTCTAATG GTGGCCAATG CTGGCGACTG CCGAGCAGTT CTGTGTCGCA AAGGAGAGGC CATTGACATG TCTCAAGATC
ACAGGCCTAT TTATCCATCA GAACGGAGGC GTGTTGAAGA ATTGGGTGGC TACATAGATG ATGGTTATCT CAATGGGGTT
TTATCAGTTA CCCGAGCACT AGGGGACTGG GACATGAAGT TACCTAAGGG TGGTCCCTCA CCTTTGATTG CAGAACCGGA
GTTCCGGCAA GTTGTTCTAA CAGAGGATGA TGAATTCCTC ATCATAGGAT GCGATGGCAT ATGGGATGTC ATGTCAAGTC
AGCATGCAGT TAGCCTTGTT CGCAGAGGCC TGAGGAGGCA CGACGATCCT GAAAAATGTG CCAGGGACCT GGTTATGGAG
GCACTACGCC TGAACACATT TGATAATCTC ACTGTGATCA TTGTATGTTT TTCTTCCCTC GACCACATGG AGCCAGAGCC
ATCCCCTCCT CGCCAACGGA AATTGAGATG CTGTAGCCTC TCTGCAGAGG CTCTTTGTAG CTTGAGGAGC TTGTTGGAAG
GCAGTGCTAG CAACTGAATG TTTGTACATA CACGGTTCAT CAAATAATGT TGAATTATTA CATGCTGTTT TTGGCTGCTT
CAGTTTAGTC ATTGGAAAAA GCAGCCATCA TTTTTTTTAA CGTGGTCGGT GGATGTACAT AACCTGGGCT AGAGGATGGA
GGTGTAAATA TGTACTGTCG TTACATTATT ATTTTTGTAC TATAGCCAAT TTTTGTTGAC TGCATTATTC ATGTCATATT
CTTGTGTGTC AATAAAACTG TTCGTAATGT CTTAGTTTCT ATTCCATTAT TTGTCAG

[show][hide][copy]CDS

>Vigan.08G192500.01
ATGGTGGCTG AAGCAGAGGT TGTGTGTCAA CAGAACGTGG GTGTGTTGGA TGTGAAACAT TTTCAAAACA AGGGAAGCGA
TGTCCCCGAG ATCGGAGATG CAGATACTAA TTTGCCTCCG AGTTTTGACA GAGTTCGTGT CACTGAGTTG GTCTCCGCCG
AGTTACTCAC TTCACAAGAA GATGCTAAGT CTGCAGACAG GATATCGGAT GCTGCTCTTG AATCTGCGGT TCTGCAGTTT
ATACCTTCCC TCCGTTCAGG TAGTTTTGCT GACATTGGGC CAAGGAGATA CATGGAAGAT GAACATATAA GGATAGATGA
TTTGTCATCT CATATGGGAT CACCATACAA CTTTCCCAGA CCAAGTGCTT TTTATGGGGT GTTTGATGGC CATGGAGGAC
CTGAAGCTGC AGCTTATATT AGAAAAAACG TCATAAAGTT CTTCTTCGAA GATGTCAGTT TCCCACAGAC TTCTGAAGTC
AATAGTGTAT TTCTGGAAGA GGTAGAGGAT TCCCTCAGAA AGGCGTTTCT TTTGGCTGAT TCAGCTTTGG CCGATGATTG
CAGTGTGAAT AGTTCATCAG GCACCACGGC CCTCACTGCT TTGATATTTG GAAGGCTTCT AATGGTGGCC AATGCTGGCG
ACTGCCGAGC AGTTCTGTGT CGCAAAGGAG AGGCCATTGA CATGTCTCAA GATCACAGGC CTATTTATCC ATCAGAACGG
AGGCGTGTTG AAGAATTGGG TGGCTACATA GATGATGGTT ATCTCAATGG GGTTTTATCA GTTACCCGAG CACTAGGGGA
CTGGGACATG AAGTTACCTA AGGGTGGTCC CTCACCTTTG ATTGCAGAAC CGGAGTTCCG GCAAGTTGTT CTAACAGAGG
ATGATGAATT CCTCATCATA GGATGCGATG GCATATGGGA TGTCATGTCA AGTCAGCATG CAGTTAGCCT TGTTCGCAGA
GGCCTGAGGA GGCACGACGA TCCTGAAAAA TGTGCCAGGG ACCTGGTTAT GGAGGCACTA CGCCTGAACA CATTTGATAA
TCTCACTGTG ATCATTGTAT GTTTTTCTTC CCTCGACCAC ATGGAGCCAG AGCCATCCCC TCCTCGCCAA CGGAAATTGA
GATGCTGTAG CCTCTCTGCA GAGGCTCTTT GTAGCTTGAG GAGCTTGTTG GAAGGCAGTG CTAGCAACTG A

[show][hide][copy]PROTEIN

>Vigan.08G192500.01
MVAEAEVVCQ QNVGVLDVKH FQNKGSDVPE IGDADTNLPP SFDRVRVTEL VSAELLTSQE DAKSADRISD AALESAVLQF
IPSLRSGSFA DIGPRRYMED EHIRIDDLSS HMGSPYNFPR PSAFYGVFDG HGGPEAAAYI RKNVIKFFFE DVSFPQTSEV
NSVFLEEVED SLRKAFLLAD SALADDCSVN SSSGTTALTA LIFGRLLMVA NAGDCRAVLC RKGEAIDMSQ DHRPIYPSER
RRVEELGGYI DDGYLNGVLS VTRALGDWDM KLPKGGPSPL IAEPEFRQVV LTEDDEFLII GCDGIWDVMS SQHAVSLVRR
GLRRHDDPEK CARDLVMEAL RLNTFDNLTV IIVCFSSLDH MEPEPSPPRQ RKLRCCSLSA EALCSLRSLL EGSASN*