GBrowse Details

Vigan.08G193200.01

Basic Information:
Name: Vigan.08G193200.01
Multiple alignment
Variant Information
Position: Chr08:17154930..17158210 (+ strand)
Length: 3281
Functional Information:
Description: Similar to uncharacterized protein. [F6I4V3, Vitis vinifera]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:99.14,66.49,209.74,107.86,275.96,300.00,276.59,227.78
Automatic updates:
Name: NM_001250563 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499890 (LOC100499890), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354077 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (ARF), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354834 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (LOC100527744), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354835 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ADP-ribosylation factor (LOC100527744), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17154930..17155118 (+ strand)
Length: 189
Type: five_prime_UTR
Position: Chr08:17155586..17155596 (+ strand)
Length: 11
Type: five_prime_UTR
Position: Chr08:17155597..17155744 (+ strand)
Length: 148
Type: CDS
Position: Chr08:17156196..17156266 (+ strand)
Length: 71
Type: CDS
Position: Chr08:17157398..17157517 (+ strand)
Length: 120
Type: CDS
Position: Chr08:17157625..17157743 (+ strand)
Length: 119
Type: CDS
Position: Chr08:17157839..17157920 (+ strand)
Length: 82
Type: CDS
Position: Chr08:17158017..17158022 (+ strand)
Length: 6
Type: CDS
Position: Chr08:17158023..17158210 (+ strand)
Length: 188
Type: three_prime_UTR


>Vigan.08G193200.01
GTAAAGTGGT AAACCGAAAT ACGAAGTGGA CCGAATAAAC GACGACGTAC AGAAATTTTG GATCTTTGTC CGCGTTCTAT
AAATCAGCGA AGGCCTTCAT CTGAGACCAC TTCCATTCTT TTCTCTTTGT CGCAAAGAGA AGAGATCTGC CTCCTCCTTC
TTCCCAAGCA TATCTCTCTT CCTCTCAAGA ATCGTTGAAA ATGGGGCTGT CCTTCACCAA GTTGTTCAGC CGGCTGTTTG
CCAAGAAAGA GATGCGTATA CTCATGGTCG GTCTCGATGC TGCGGGTAAG ACCACCATTC TGTACAAGCT CAAGCTGGGA
GAGATTGTAA CCACCATTCC CACCATTGGG TTTAATGTGG AAACTGTGGA ATATAAGAAC ATCAGCTTCA CTGTTTGGGA
TGTGGGAGGC CAAGACAAGA TCCGCCCATT GTGGAGACAT TACTTCCAAA ATACCCAAGG ACTTATCTTT GTGGTTGATA
GCAATGACAG GGACCGAGTT GTTGAAGCTA GGGATGAGCT GCATAGAATG CTGAATGAGG ATGAGTTGAG AGATGCCGTG
CTTCTAGTTT TTGCCAACAA GCAAGATCTT CCAAATGCTA TGAATGCTGC GGAGATCACT GATAAGCTTG GCCTTCATTC
CCTCCGCCAG CGTCACTGGT ATATCCAGAG CACATGCGCC ACATCTGGTG AAGGGCTCTA TGAAGGACTT GACTGGCTCT
CAAACAACAT TGCAAACAAG GCATAGAGAT TTATTAGTTG AAGGATGCAA GGAAGTTGAG TTTACTTCGC CCATCTCTGC
TTTTATGATT TTCTTGTCCT TAGATTTTCA TTGTTCGGCC ATGTATTATT TTTCTTCAAA AAGAACAGCG GTCTGTTACT
GAGGAATAAT TTGATTTTTT TTTCCATGTA TAACCAAATA GCATTGTTTA CGAT

>Vigan.08G193200.01
ATGGGGCTGT CCTTCACCAA GTTGTTCAGC CGGCTGTTTG CCAAGAAAGA GATGCGTATA CTCATGGTCG GTCTCGATGC
TGCGGGTAAG ACCACCATTC TGTACAAGCT CAAGCTGGGA GAGATTGTAA CCACCATTCC CACCATTGGG TTTAATGTGG
AAACTGTGGA ATATAAGAAC ATCAGCTTCA CTGTTTGGGA TGTGGGAGGC CAAGACAAGA TCCGCCCATT GTGGAGACAT
TACTTCCAAA ATACCCAAGG ACTTATCTTT GTGGTTGATA GCAATGACAG GGACCGAGTT GTTGAAGCTA GGGATGAGCT
GCATAGAATG CTGAATGAGG ATGAGTTGAG AGATGCCGTG CTTCTAGTTT TTGCCAACAA GCAAGATCTT CCAAATGCTA
TGAATGCTGC GGAGATCACT GATAAGCTTG GCCTTCATTC CCTCCGCCAG CGTCACTGGT ATATCCAGAG CACATGCGCC
ACATCTGGTG AAGGGCTCTA TGAAGGACTT GACTGGCTCT CAAACAACAT TGCAAACAAG GCATAG

>Vigan.08G193200.01
MGLSFTKLFS RLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH
YFQNTQGLIF VVDSNDRDRV VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA
TSGEGLYEGL DWLSNNIANK A*