VIGGS:GBrowse

Vigan.08G195600.01

Basic Information:

Name:	Vigan.08G195600.01 Multiple alignment Variant Information
Position:	Chr08:17402791..17405547 (- strand)
Length:	2757

Functional Information:

Description:	Similar to Uncharacterized protein. [I1L7N2, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	DNA-binding WRKY (IPR003657)
InterPro:	Transcription factor, WRKY group IIc (IPR017396)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:16.14,10.97,15.23,5.65,19.57,11.23,42.99,10.09
Arabidopsis thaliana homolog:	AT2G47260.1

Automatic updates:

Name:	DQ322698 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max WRKY54 mRNA, complete cds.
PubMed ID:	18384508 NCBI(pubmed)
Status:	Known Variant

Name:	KM587697 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max clone GmWRKY3 WRKY mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250509 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max WRKY transcription factor 54 (WRKY54), mRNA.
PubMed ID:	31271689 NCBI(pubmed)
PubMed ID:	18384508 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:17402791..17403666 (- strand)
Length:	876
Type:	three_prime_UTR

Position:	Chr08:17403667..17404069 (- strand)
Length:	403
Type:	CDS

Position:	Chr08:17404264..17404407 (- strand)
Length:	144
Type:	CDS

Position:	Chr08:17404941..17405347 (- strand)
Length:	407
Type:	CDS

Position:	Chr08:17405348..17405547 (- strand)
Length:	200
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G195600.01
ATCTTTGTTC CTTCCACACA GTTTTCACTT TCTTCTAAAT CCAAAAGTAC TCACAAACTT TCTCTCTCTC TTTCACACAC
ACCTAAGCTA TAAACCAGAT CAACCCTACC TCTCTCCACT TCTCACTAGT GTTAAGTTCG AGTTTGTGGC GTGTGAGAGA
TGAAGGATTT GAGCATTTGA GAGATCAACG CGTTTGGTAT ATGGAGAAGA AGGAGATGGT TGTGAAGACT GAGGATGCGG
TTGGGTCCTC TTCCTTCCCT TGTTATAATT CAAACGTTTA TCCATTCTCG AACACCTTTG ATTTCTCTGA GGTGGAAAAG
AGCTCTTTAG GGTTTATGGA GCTACTGGGT GTGCAGGATT ACAGTCCTCT GCTTGAGTTG CCTCAACTTT CAACCGTTTC
TGTGCCTCAT CACTCTACAG TTAAGGCTCC ACCTGATAAC GGAAAAGAGT GTTCCGAGGT GTTGAACCAC CAACCCGCCA
CTCCGAACTC TTCTTCTATT TCATCTGCAT CCAGTGATGC TGTCAATGAT GAACAGAATA AGACTCTAGA CCAAGTTGAA
GAAGATGACG ATGAAGAAGA AGAAGGAAAA CAAAAGACTA AGAAACAGTT GAAGCCCAAG AAGACAAATC AGAAGAGACA
GAGAGAACCA AGATTCGCGT TCATGACGAA AAGCGAGGTC GATCATCTGG AAGATGGGTA CAGATGGAGG AAGTACGGTC
AAAAGGCCGT GAAAAACAGC CCTTTTCCCA GGAGTTACTA TCGTTGCACC AGTGTTTCAT GTAATGTGAA GAAACGCGTG
GAACGATCTT TCACTGATCC AAGCGTGGTA GTCACAACCT ACGAAGGCCA ACACACACAT CCAAGCCCAG TTATGCCTCG
CTCAGGCGTC CCCGCTGGAT ACGCTACCAA CTTTACTTCA GTTTTTCCAC AAGCAGGAAA CTACTTATCC CACTATCAGC
AGCAGCACCA ACAGCAACAA CTTATTTTCA ACACATTGTC CTCTTTGGGT TTCCCTTACA ATGATTCTTC CACTCCAAAG
AACGCGGGTT TTACTCAAGA GAGACGGCTT TGTAATCCGG GGACGAATGC ATTTCTAAGG GACCATGGAC TTCTTCAAGA
TGTTGTTCCC TCACACATGT TGAAAGAAGA GTAGAGATGA TAACTCCATT ACTCATGCTT CTATGTGGTT TATTTTTTGC
TGACTTTTTC CTATGAGAGT TAGGTGAGAA CTCTAGTAAT GGTACATGTA ATTTTTCTTC CTGACCGATG GTAATATTAG
TGATCATGAT GATATATATA CTTGTAAAAC CCAGTTTATA GCTTTTTGCA CATAGCCCAT CGATCATTAC TATGTCTGTA
TAACAAGATG GATTATGATC TAATGCAGGG ACTACTCCTA GTTGTAGTTT ATTTTGCTTC GATGTTAATT TTCTTATTAT
GGTATAGAAA AAACAAACCT CCTCCCAAGA AAAGAAGAGA AAGAAAAGGG AACAAAGCAT TCATTGGCGG GTTGGGGTGT
GTGGAAATGA TAAAAAAGAA ATAGGCAAAT AGACTTCTGT CTTCTTTTTA ATATTCTGAT TCTGACTCCT CGTTTTGTCT
TGTATTTTTG TTTGTTCTAG TTGAAGGAAT GTGCATTGAT TTCACAGATG TACAGCAGTG AAGATTGTTA GGTTAAGGTT
TTTAAACGGG AACGAACAAG TGGTGTAGAA ACTTGGTTTG GCTTGTTTTG TTCCCGGAAT CGATCGAAAA GTAATTATAG
ATAAATGGGT TTTGAAATTA GGAGGATATG GTGGTAAAAG CGTTGTCCCA ATATGGAGAG GAGGTTATAA ATAGGAAGAG
TAATTCAACT ACTCTCCGAT CCATTTTGAG GTGCGTGAGT TAATGGCTCT CTGTATCCTG CACGCGATGC AATCTATTCA
CGGATTGAAG AGTGGCGGAG ACGGGGGGAA TTAAAGAAGA ACATAAGCAA AAGGAGAAAA AATTATACAA GCTTAGCATA
AGGAGTGTGA TATGGTCACT ATGATGGAAT

[show][hide][copy]CDS

>Vigan.08G195600.01
ATGGAGAAGA AGGAGATGGT TGTGAAGACT GAGGATGCGG TTGGGTCCTC TTCCTTCCCT TGTTATAATT CAAACGTTTA
TCCATTCTCG AACACCTTTG ATTTCTCTGA GGTGGAAAAG AGCTCTTTAG GGTTTATGGA GCTACTGGGT GTGCAGGATT
ACAGTCCTCT GCTTGAGTTG CCTCAACTTT CAACCGTTTC TGTGCCTCAT CACTCTACAG TTAAGGCTCC ACCTGATAAC
GGAAAAGAGT GTTCCGAGGT GTTGAACCAC CAACCCGCCA CTCCGAACTC TTCTTCTATT TCATCTGCAT CCAGTGATGC
TGTCAATGAT GAACAGAATA AGACTCTAGA CCAAGTTGAA GAAGATGACG ATGAAGAAGA AGAAGGAAAA CAAAAGACTA
AGAAACAGTT GAAGCCCAAG AAGACAAATC AGAAGAGACA GAGAGAACCA AGATTCGCGT TCATGACGAA AAGCGAGGTC
GATCATCTGG AAGATGGGTA CAGATGGAGG AAGTACGGTC AAAAGGCCGT GAAAAACAGC CCTTTTCCCA GGAGTTACTA
TCGTTGCACC AGTGTTTCAT GTAATGTGAA GAAACGCGTG GAACGATCTT TCACTGATCC AAGCGTGGTA GTCACAACCT
ACGAAGGCCA ACACACACAT CCAAGCCCAG TTATGCCTCG CTCAGGCGTC CCCGCTGGAT ACGCTACCAA CTTTACTTCA
GTTTTTCCAC AAGCAGGAAA CTACTTATCC CACTATCAGC AGCAGCACCA ACAGCAACAA CTTATTTTCA ACACATTGTC
CTCTTTGGGT TTCCCTTACA ATGATTCTTC CACTCCAAAG AACGCGGGTT TTACTCAAGA GAGACGGCTT TGTAATCCGG
GGACGAATGC ATTTCTAAGG GACCATGGAC TTCTTCAAGA TGTTGTTCCC TCACACATGT TGAAAGAAGA GTAG

[show][hide][copy]PROTEIN

>Vigan.08G195600.01
MEKKEMVVKT EDAVGSSSFP CYNSNVYPFS NTFDFSEVEK SSLGFMELLG VQDYSPLLEL PQLSTVSVPH HSTVKAPPDN
GKECSEVLNH QPATPNSSSI SSASSDAVND EQNKTLDQVE EDDDEEEEGK QKTKKQLKPK KTNQKRQREP RFAFMTKSEV
DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT SVSCNVKKRV ERSFTDPSVV VTTYEGQHTH PSPVMPRSGV PAGYATNFTS
VFPQAGNYLS HYQQQHQQQQ LIFNTLSSLG FPYNDSSTPK NAGFTQERRL CNPGTNAFLR DHGLLQDVVP SHMLKEE*