GBrowse Details

Vigan.08G196200.01

Basic Information:
Name: Vigan.08G196200.01
Multiple alignment
Variant Information
Position: Chr08:17462041..17464821 (+ strand)
Length: 2781
Functional Information:
Description: Similar to uncharacterized LOC101220175. [XP_004163139.1, Cucumis sativus]
InterPro: Domain of unknown function DUF4033 (IPR025114)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.71,2.20,8.11,38.03,3.00,13.31,7.96,7.81
Arabidopsis thaliana homolog: AT4G01995.1
Automatic updates:
Name: NM_001255779 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788939 (LOC100788939), mRNA; nuclear gene for chloroplast product.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:17462041..17462526 (+ strand)
Length: 486
Type: five_prime_UTR
Position: Chr08:17462527..17462640 (+ strand)
Length: 114
Type: CDS
Position: Chr08:17462729..17462824 (+ strand)
Length: 96
Type: CDS
Position: Chr08:17462907..17463011 (+ strand)
Length: 105
Type: CDS
Position: Chr08:17463713..17463812 (+ strand)
Length: 100
Type: CDS
Position: Chr08:17463933..17464024 (+ strand)
Length: 92
Type: CDS
Position: Chr08:17464128..17464208 (+ strand)
Length: 81
Type: CDS
Position: Chr08:17464331..17464399 (+ strand)
Length: 69
Type: CDS
Position: Chr08:17464472..17464603 (+ strand)
Length: 132
Type: CDS
Position: Chr08:17464604..17464821 (+ strand)
Length: 218
Type: three_prime_UTR


>Vigan.08G196200.01
CTTCAACATC AATATTACAA CAACAAAAAA TTATAAATTG ATATTTGATA CGTCGAGTGC TGGAATCTGC GATACCTTCG
GAGCTGCTCC ACGCATATTT CGAGTTCTGC ATTTTTTATG GCTTTGCATT GCATTATGTA GTTGTCCAAA GTTTCCGACA
CGCTACCTAC AGTTACGTCC AAGGCCGATA ACATTCGATA GAGAAATACT TTTCACTGGT CTGTCAGCCA CCGAACAAAT
TCGCCGGAGG AGCCATACTC CACCAGGAAT CAGATGGGCG TGATTCATCA CCGTCGATTG GATCGTCTCA CAGTCGGATC
GGGTGCTCTG TCTCTTATTG ATTCCTTAAA AGGGTTTCGT TAGAGTTTAT CAAAACGCGC CACGAGGCGT CGTTTTGATT
ATGAGTTGAA AAAACCGGTA ACCGGTAGTC TTTTTTGAGT TTTTTTAACT GAAGTGATTA TGCGGTTTAG TTACGGTTAG
AGAGAAATGA AGGCGCTAGG CATTGTCGTT GGTGCTGCCC CATTGCCCGT GCTGTGTTCG CGTGCTCGGA ACCATCGTTT
TCGCGTTTCC TTTTCTTCTC CTTCGTCAGG TTCCAAAGCG GTGGAACAAG TGGGAATTGC AGCTGCGAAA CCTGAATACA
AGCCTGGGGT GTTTGATGAC ATGTTTCTCA ATTTGTTCCG CAACAAATTG GTACAGGAAG TTGGATGGGA CTCGAAGGAA
CCTGGATATG ATGGACTAAT TGAAGTTGCG CATCGTCTAA TGATGAAGGG CACTTCCAAT TCTACTACCG TGGAAGCAGC
GGTACGAATA TTGAGGTCTC TGTTCCCTCC ATATCTTTTG GAGCTCTATC AAATGCTCAT AGCTCCCATA GGAGGAGGCA
AAATTGCGGC TATGATGGTT GCAAGGGTTA CTGTATTGAC TTGCCAATGG CTAATGGGCC CTTGCAAAGT GAATTCTGTT
GATCTAACAG ATGGAACCTC ATGCAGTAGT GGGGTGTATG TGGAAAGATG CAGGTATCTG GAGGAAAGCA AGTGTGTTGG
TATTTGTACC AACACCTGTA AGTTTCCGAC ACAGACCTTC TTCAAGGATC ATATGGGGGT TCCATTACTT ATGGAGCCTA
ACTTTGGCGA TTACAGCTGT CAGTTCAAAT TCGGAGTTCT TCCCCCACAA GATGATACCA TCCTGAAGGA GCCATGCTTG
GAAGCCTGTC CAAACGCTTC CCGACGACGC ATGGTAGCCA ACAATGTAGA TGTAACTACG TGCCCAAAGG CATGAATTCA
TTTTTCTGAG ACTTGGGGTT TTCACCTTTA TGTTCACTGT CCAAAGCCTC ATGTACATTC TTGAAGAAGG AAATACAGCG
AGAACCCATG AAATTAGTAA TACAACTTAT CCTTTTCCAA CTAGATTATA TGGAGTGCTG ATATTTTGTA CTTGAATACA
TTGATATTTA ATCTCCTGGA TTTAGACATT TTACGATAAT GATATAATAC AAA

>Vigan.08G196200.01
ATGAAGGCGC TAGGCATTGT CGTTGGTGCT GCCCCATTGC CCGTGCTGTG TTCGCGTGCT CGGAACCATC GTTTTCGCGT
TTCCTTTTCT TCTCCTTCGT CAGGTTCCAA AGCGGTGGAA CAAGTGGGAA TTGCAGCTGC GAAACCTGAA TACAAGCCTG
GGGTGTTTGA TGACATGTTT CTCAATTTGT TCCGCAACAA ATTGGTACAG GAAGTTGGAT GGGACTCGAA GGAACCTGGA
TATGATGGAC TAATTGAAGT TGCGCATCGT CTAATGATGA AGGGCACTTC CAATTCTACT ACCGTGGAAG CAGCGGTACG
AATATTGAGG TCTCTGTTCC CTCCATATCT TTTGGAGCTC TATCAAATGC TCATAGCTCC CATAGGAGGA GGCAAAATTG
CGGCTATGAT GGTTGCAAGG GTTACTGTAT TGACTTGCCA ATGGCTAATG GGCCCTTGCA AAGTGAATTC TGTTGATCTA
ACAGATGGAA CCTCATGCAG TAGTGGGGTG TATGTGGAAA GATGCAGGTA TCTGGAGGAA AGCAAGTGTG TTGGTATTTG
TACCAACACC TGTAAGTTTC CGACACAGAC CTTCTTCAAG GATCATATGG GGGTTCCATT ACTTATGGAG CCTAACTTTG
GCGATTACAG CTGTCAGTTC AAATTCGGAG TTCTTCCCCC ACAAGATGAT ACCATCCTGA AGGAGCCATG CTTGGAAGCC
TGTCCAAACG CTTCCCGACG ACGCATGGTA GCCAACAATG TAGATGTAAC TACGTGCCCA AAGGCATGA

>Vigan.08G196200.01
MKALGIVVGA APLPVLCSRA RNHRFRVSFS SPSSGSKAVE QVGIAAAKPE YKPGVFDDMF LNLFRNKLVQ EVGWDSKEPG
YDGLIEVAHR LMMKGTSNST TVEAAVRILR SLFPPYLLEL YQMLIAPIGG GKIAAMMVAR VTVLTCQWLM GPCKVNSVDL
TDGTSCSSGV YVERCRYLEE SKCVGICTNT CKFPTQTFFK DHMGVPLLME PNFGDYSCQF KFGVLPPQDD TILKEPCLEA
CPNASRRRMV ANNVDVTTCP KA*