GBrowse Details

Vigan.08G196500.01

Basic Information:
Name: Vigan.08G196500.01
Multiple alignment
Variant Information
Position: Chr08:17480336..17484314 (+ strand)
Length: 3979
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [U5TZI1, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
ClpP, active site (IPR018215)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:47.02,35.66,58.14,170.56,45.57,77.19,27.15,34.48
Arabidopsis thaliana homolog: AT1G02560.1
Automatic updates:
Name: NM_001255587 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like (LOC100798621), transcript variant 1, mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17480336..17480519 (+ strand)
Length: 184
Type: five_prime_UTR
Position: Chr08:17480520..17480641 (+ strand)
Length: 122
Type: CDS
Position: Chr08:17481159..17481278 (+ strand)
Length: 120
Type: CDS
Position: Chr08:17481354..17481468 (+ strand)
Length: 115
Type: CDS
Position: Chr08:17481557..17481649 (+ strand)
Length: 93
Type: CDS
Position: Chr08:17481880..17481925 (+ strand)
Length: 46
Type: CDS
Position: Chr08:17482049..17482121 (+ strand)
Length: 73
Type: CDS
Position: Chr08:17483044..17483078 (+ strand)
Length: 35
Type: CDS
Position: Chr08:17483203..17483291 (+ strand)
Length: 89
Type: CDS
Position: Chr08:17483814..17484035 (+ strand)
Length: 222
Type: CDS
Position: Chr08:17484036..17484314 (+ strand)
Length: 279
Type: three_prime_UTR


>Vigan.08G196500.01
TTTTGACCTG ATTATCATAT ACAGGGAGGC TTTCCTTCAA CACTAACAAA CGCTGGGTTG AGTTCACTGT CGACAAGTTT
TGCCCCAACA CTCAACTCCG CTATCCCTAT TCTTTCTTCT TCTTCTTATT ATTAAACAAA CACTCTCATA CCATTGCACC
TTCCTTCTCC TCCACCCATT AACAATGGCT CACACGTCCC TTTTCACTCC CTCTTCCTCT CTCAGATTCA ACCCTCTTCT
TCTTTCCTCC ACTCCCACTT CTTCTTCTTC TCTTCCGCAC AACCTTTCTT TCCCCACCCT CTCCAGGAAA CTAAGGAAAT
CGGTGGAAGG TAGAAAGATT AATAAAAATT CTGCTGTGAA GGCAGTGTAT GGTGATCAAT TTTGGACACC TGAGAGCAGT
TCACGTCAGG ATATTTGGTC CATAAGGAGG GATTTGAAAG TCCCATCTTC CCCTTATTTC CCCACCTATG CACAAGGACA
AGGGCCACCT CCTATGGTGC AGGAGCGTTT CCAAAGTGTT ATAAGTCAGC TTTTCCAATA TAGAATAATT CGTTGTGGTG
GAGCTGTTGA TGACGATATG GCAAATATCA TAGTTGCTCA GCTCCTGTAC CTAGATGCTG TTGATCCTAA CAAGGATATT
GTCATGTATG TAAATTCTCC AGGAGGGTCG GTTACAGCTG GTATGGCAAT ATTTGATACA ATGAGGCACA TTCGACCTGA
TGTGTCTACT GTCTGTGTTG GATTAGCGGC TAGTATGGGA GCTTTTCTGC TTAGCGCTGG GACCATTGGA AAGAGATACA
GTTTGCCAAA TTCAAGGATT ATGATTCATC AACCGCTTGG TGGTGCTCAA GGAGGCCAAA CTGACATAGA TATTCAGGCT
AATGAAATGC TGCATCACAA GGCAAATCTG AATGGATATC TCTCCTATCA CACCGGCCAA AGTTTGGAGA AGATTAACCA
GGATACAGAC CGTGACTTTT TTATGAGTGC AAAAGAAGCC AAGGATTATG GACTAATTGA TGGTGTGATT ATGAATCCTC
TCAAAGCTCT CCAGCCATTA GAGGCTGCAG CAGAGGGTAA AGATCGGGCC AGTGTTTGAG CACCACATTG TTGCACTTTA
GTTACCGAGG TAGGGTTAAA CTGTAAGATG TTTTTGGTTA CTGAGTTCAA CTGAACTTTT TAACGGATGT TGATATCTGT
GTACCTGTAC CAAAATGAGG TCAAATTCAT ACTTCTATTT ATTGCTTTAG ATTTTATACT CACAGATGGT TCTTTAATTA
ATGAATCCTG AATGTAATTT TTCCTTCACC CTTTCGTCTG TGATTATCTG ATACTGACAT GCTTCGTGCT TCGTTAAATA
ATGAAACGAT ATGCTACA

>Vigan.08G196500.01
ATGGCTCACA CGTCCCTTTT CACTCCCTCT TCCTCTCTCA GATTCAACCC TCTTCTTCTT TCCTCCACTC CCACTTCTTC
TTCTTCTCTT CCGCACAACC TTTCTTTCCC CACCCTCTCC AGGAAACTAA GGAAATCGGT GGAAGGTAGA AAGATTAATA
AAAATTCTGC TGTGAAGGCA GTGTATGGTG ATCAATTTTG GACACCTGAG AGCAGTTCAC GTCAGGATAT TTGGTCCATA
AGGAGGGATT TGAAAGTCCC ATCTTCCCCT TATTTCCCCA CCTATGCACA AGGACAAGGG CCACCTCCTA TGGTGCAGGA
GCGTTTCCAA AGTGTTATAA GTCAGCTTTT CCAATATAGA ATAATTCGTT GTGGTGGAGC TGTTGATGAC GATATGGCAA
ATATCATAGT TGCTCAGCTC CTGTACCTAG ATGCTGTTGA TCCTAACAAG GATATTGTCA TGTATGTAAA TTCTCCAGGA
GGGTCGGTTA CAGCTGGTAT GGCAATATTT GATACAATGA GGCACATTCG ACCTGATGTG TCTACTGTCT GTGTTGGATT
AGCGGCTAGT ATGGGAGCTT TTCTGCTTAG CGCTGGGACC ATTGGAAAGA GATACAGTTT GCCAAATTCA AGGATTATGA
TTCATCAACC GCTTGGTGGT GCTCAAGGAG GCCAAACTGA CATAGATATT CAGGCTAATG AAATGCTGCA TCACAAGGCA
AATCTGAATG GATATCTCTC CTATCACACC GGCCAAAGTT TGGAGAAGAT TAACCAGGAT ACAGACCGTG ACTTTTTTAT
GAGTGCAAAA GAAGCCAAGG ATTATGGACT AATTGATGGT GTGATTATGA ATCCTCTCAA AGCTCTCCAG CCATTAGAGG
CTGCAGCAGA GGGTAAAGAT CGGGCCAGTG TTTGA

>Vigan.08G196500.01
MAHTSLFTPS SSLRFNPLLL SSTPTSSSSL PHNLSFPTLS RKLRKSVEGR KINKNSAVKA VYGDQFWTPE SSSRQDIWSI
RRDLKVPSSP YFPTYAQGQG PPPMVQERFQ SVISQLFQYR IIRCGGAVDD DMANIIVAQL LYLDAVDPNK DIVMYVNSPG
GSVTAGMAIF DTMRHIRPDV STVCVGLAAS MGAFLLSAGT IGKRYSLPNS RIMIHQPLGG AQGGQTDIDI QANEMLHHKA
NLNGYLSYHT GQSLEKINQD TDRDFFMSAK EAKDYGLIDG VIMNPLKALQ PLEAAAEGKD RASV*