GBrowse Details

Vigan.08G198000.01

Basic Information:
Name: Vigan.08G198000.01
Multiple alignment
Variant Information
Position: Chr08:17622525..17623906 (+ strand)
Length: 1382
Functional Information:
Description: Similar to Uncharacterized protein. [I1JBG7, Glycine max]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Universal stress protein A (IPR006015)
UspA (IPR006016)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.25,0.17,22.40,79.05,31.60,122.88,179.38,11.81
Arabidopsis thaliana homolog: AT3G62550.1
Automatic updates:
Name: NM_001249483 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306535 (LOC100306535), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17622525..17622780 (+ strand)
Length: 256
Type: five_prime_UTR
Position: Chr08:17622781..17622940 (+ strand)
Length: 160
Type: CDS
Position: Chr08:17623038..17623150 (+ strand)
Length: 113
Type: CDS
Position: Chr08:17623233..17623351 (+ strand)
Length: 119
Type: CDS
Position: Chr08:17623436..17623511 (+ strand)
Length: 76
Type: CDS
Position: Chr08:17623512..17623906 (+ strand)
Length: 395
Type: three_prime_UTR


>Vigan.08G198000.01
GTAAGCAGTG GTGAGATTCG AAAACTAGAG CAAAGAAACC ATGTGCTGTG TTTTGTTTGT TTTCATGATT CAGTAGATTA
GAATTCAAAG GTTTAAACAA CACCAAATAC TATTCCAAAA AGCGCATGAG CAGTGACTGA CGCTATATAG TGCAACCCCA
CTTCATCCCC TTTAACTATT ATCCAAACCC AACAACATTT CTGAAGCTTG GCATACACAG AAATAGAAAA GCTCTCACCT
TGCAGACAAT AAAGTAATGG AAAACAAAGA GAGAAAGATT ATGGTGGCTG TGGATGAGAG CCAAGAGAGC ATGTATGCCC
TTTCATGGTG CATCACCAAT CTTGTTACTG ATACCAACAA GCTTGTGCTT CTTTATGTCA GGCCACCCTC TGCTTTCTAC
TCCTTGGATG CTGCAGGGTA TATCTTTTCC AATGATGTTA TTGATGCTAT GGAAAAGTAC AGTATGCACC TGGTTAATTC
AGTGATGGAA AGAGCTGAAG CCACATGTAG AAATTTGAAG GCTACAAATG TGAACATGGA AAGGGTAGTT GGGGTAGGAG
ATGCGAAGGA TGTAATATGC AGTGTGGCGA AGAAACTAGA GGCTGATACC TTGGTCATGG GAAGTCATGG CTATGGATTC
TTTAAGAGGG CAATCCTTGG AAGTGTTAGT GATCACTGTG CCAAACATGC AGAGTGTCCG GTTGTAATCG TGAAGCACCC
GTAAGAGAGA TTGGTTTTCT GGACATAGCT TTAACTACTT CCTGTTGCTG CCCATGGTTT GTGTATATAA GTTTTACTTT
TATTTTATGT TTTTGCTGTG GTTGAATCGT GGTATAGGTT GTATTCTAAA GGTTGGAAAT CATGAAATGA CATGAACGTG
TGCTTTTGCC AAGTTAATCA GGTTTACCCA AAATAACCAT ACTCAGGTCC TCGAAGAACC ATTGGTGCAA AACAGGACAT
AAATCTTATG ATATAAGACC GTTAACTCTT TTAGTTAACC ATTTGAGACT AATTGATTTT AAGAAGTTCT CCATAAAATT
GATTTATACT TAGTGGAATA ATAGAGTGAA CAAATGACAA ATTCTAATAT TATTATATGA AGTAAATTTT AAATTTATT

>Vigan.08G198000.01
ATGGAAAACA AAGAGAGAAA GATTATGGTG GCTGTGGATG AGAGCCAAGA GAGCATGTAT GCCCTTTCAT GGTGCATCAC
CAATCTTGTT ACTGATACCA ACAAGCTTGT GCTTCTTTAT GTCAGGCCAC CCTCTGCTTT CTACTCCTTG GATGCTGCAG
GGTATATCTT TTCCAATGAT GTTATTGATG CTATGGAAAA GTACAGTATG CACCTGGTTA ATTCAGTGAT GGAAAGAGCT
GAAGCCACAT GTAGAAATTT GAAGGCTACA AATGTGAACA TGGAAAGGGT AGTTGGGGTA GGAGATGCGA AGGATGTAAT
ATGCAGTGTG GCGAAGAAAC TAGAGGCTGA TACCTTGGTC ATGGGAAGTC ATGGCTATGG ATTCTTTAAG AGGGCAATCC
TTGGAAGTGT TAGTGATCAC TGTGCCAAAC ATGCAGAGTG TCCGGTTGTA ATCGTGAAGC ACCCGTAA

>Vigan.08G198000.01
MENKERKIMV AVDESQESMY ALSWCITNLV TDTNKLVLLY VRPPSAFYSL DAAGYIFSND VIDAMEKYSM HLVNSVMERA
EATCRNLKAT NVNMERVVGV GDAKDVICSV AKKLEADTLV MGSHGYGFFK RAILGSVSDH CAKHAECPVV IVKHP*