GBrowse Details

Vigan.08G200400.01

Basic Information:
Name: Vigan.08G200400.01
Multiple alignment
Variant Information
Position: Chr08:17842395..17844782 (+ strand)
Length: 2388
Functional Information:
Description: Similar to Aminopeptidase-like protein AC3.5. [XP_007027394.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:49.97,29.81,22.93,59.31,27.17,47.83,15.38,23.49
Arabidopsis thaliana homolog: AT3G09860.1
Automatic updates:
Name: NM_001250132 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527253 (LOC100527253), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17842395..17842574 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr08:17842575..17842726 (+ strand)
Length: 152
Type: CDS
Position: Chr08:17843974..17844052 (+ strand)
Length: 79
Type: CDS
Position: Chr08:17844176..17844244 (+ strand)
Length: 69
Type: CDS
Position: Chr08:17844245..17844782 (+ strand)
Length: 538
Type: three_prime_UTR


>Vigan.08G200400.01
TTCGTTTTCA AAACAGAAGC CCAAGAAAGA AATTGTGGCA CTAATATCAC AGCAAAAACA TGAAACGACG TCGTGAGCAA
ATTTATGTAT GAATAAGAGT GGTTTACATT GAGAGAAGGG GATAAGAGTG GAGCTCTGAA AACTCAGAGA GAAGCAAAGC
AGAGAAAGGA GAGAAGAAGA ATGGAAAAGT ACTTCGGAAA CGCTTATCGC GGTGACCCGG GCGTGCCCCA TGCGGACCCG
GATCGGTTTG TCAACATTTG GATTGGATCC GCTGCCTTCT CTGTTCTCAC ATACTTCAAT CCCTATATGT GGACGCTTTC
TAATCAGTTC AACTGGCATG ATAAAGCATT TTTATTCGAG CAATATCACT GGAAACAGGC AAGGAAGAAG AATCAGCCAT
ATGAGTTCTT GTGGAACAAG ACTTGGGATA AGGTCCACCG AGAACATTAC TACTACAACT GGCCTGTTTA CTTTCCTTAG
GCCCCTTCTG TTTTATTTCT TACAGACTTT GTCCTATCTT TATTTTGTTT GCAACCCTGG ATAAAATTTA CGTCCCCCTC
CCCCACTCCA ATGCTTTTCT CTCATGACTT CACTTTTCTT GTGTTCAGTC CTCTTTTTTA ATAACTACAT GATTATTCGA
ATTACAAACT ATCGAGATAA GTAACTGTAT TCAATTGTTG TGAGCATGTT CTGTTGACCT CCTACAGGGT TTTATAGAAG
CTACTTATAC ACAACTTTGG GGATGATAAT CTTTTTAGTC TTTGGGGGTT TATAGAAGCT ACTTATACTT ATACACTACT
TATACACTGC ATGGCTGTTA AGCATCATTG AACTACAGTC AGTGTAGTGT ATATTTCCCG TCAGTTTAAG ATACTATCTG
GGGAGTTCTG CATAATATAC TTCTGTAAAC AAGTAAAAAA GTTGAAGGGT GAGATGCTAT TAACTCCAAG GGGACATCTT
CTGCATTTGC TAAACTTATG GATGGTTGAG TCCTAAAGAA AATAATCTGA TTCCGTAT

>Vigan.08G200400.01
ATGGAAAAGT ACTTCGGAAA CGCTTATCGC GGTGACCCGG GCGTGCCCCA TGCGGACCCG GATCGGTTTG TCAACATTTG
GATTGGATCC GCTGCCTTCT CTGTTCTCAC ATACTTCAAT CCCTATATGT GGACGCTTTC TAATCAGTTC AACTGGCATG
ATAAAGCATT TTTATTCGAG CAATATCACT GGAAACAGGC AAGGAAGAAG AATCAGCCAT ATGAGTTCTT GTGGAACAAG
ACTTGGGATA AGGTCCACCG AGAACATTAC TACTACAACT GGCCTGTTTA CTTTCCTTAG 

>Vigan.08G200400.01
MEKYFGNAYR GDPGVPHADP DRFVNIWIGS AAFSVLTYFN PYMWTLSNQF NWHDKAFLFE QYHWKQARKK NQPYEFLWNK
TWDKVHREHY YYNWPVYFP*