GBrowse Details

Vigan.08G200500.01

Basic Information:
Name: Vigan.08G200500.01
Multiple alignment
Variant Information
Position: Chr08:17849596..17851780 (+ strand)
Length: 2185
Functional Information:
Description: Similar to thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like. [XP_004497532.1, Cicer arietinum]
InterPro: TPM domain (IPR007621)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.49,3.60,5.61,13.58,1.56,8.80,1.59,1.84
Arabidopsis thaliana homolog: AT5G52970.1
Automatic updates:
Name: NM_001252971 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thylakoid lumenal 15.0 kDa protein 2, chloroplastic-like (LOC100795443), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17849596..17849709 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr08:17849710..17849914 (+ strand)
Length: 205
Type: CDS
Position: Chr08:17849985..17850091 (+ strand)
Length: 107
Type: CDS
Position: Chr08:17850723..17850813 (+ strand)
Length: 91
Type: CDS
Position: Chr08:17850946..17851014 (+ strand)
Length: 69
Type: CDS
Position: Chr08:17851136..17851245 (+ strand)
Length: 110
Type: CDS
Position: Chr08:17851326..17851418 (+ strand)
Length: 93
Type: CDS
Position: Chr08:17851419..17851780 (+ strand)
Length: 362
Type: three_prime_UTR


>Vigan.08G200500.01
GCTTGACAAA ACCTACTCAG TGCAGCACAG CCCAAATTGA TAAGCCCAAC TAAACCTTGT AAAGAAGCAT CCATAACAAC
TGTCAAACAA GGGCGTTTCC AGAGAAGGAA GATCATGGCG CATTCTCATT ATCTTCATCA TATTCCTTCG TTACCATCTT
TATCTGCATC TCTCACTCCC CAAACTCCTT CGCTTCCCGT TCGGCGATTA CAGCTCAAGA CGCTGTCGTA TCATGCCCCT
TCACACGCCA CTTTCAGCTC TTTCAAACCT CTTCATTTTG CTCTCTCTGG AGCCCTCTCA CTTGGGTTAT TATTCGGAGG
AATTCGGGTG GCCGAGGCTG CAAAAGTAGG TGTGAACAAG CCGGAGTTGC TCCCCAAGGA GTTTACCTCT GTCATTGATG
TTGCTGGGTT CCTCTCTGAT GGACAGGAGA AAAGATTAGC AGCAGAGATT GCTGCTCTTG AAGCAGATAC CGGATTCAAG
TTAAGGGTTT TGGCCCAGAA CTATCCTGAT ACGCCAGGTT TGGCTGTCAA AGATTTCTGG CAGGTAGATG ACAGAACAGT
TGTCTTTGTT GCTGATCCCA CATTTGGTAA TATTTTGAAT TTCAACGTTG GTGCTTCAGT TGATTTGGAC ATTCCACGTA
GCTTTTGGAG TCGCTTGGCT GGGAAATATG GGAACATTTT CTATTGGAAA GAAAAGGGGG AAGATGCATC TATTGAAGCA
GCAGTAACGG CAATTTCTAA TTGCCTGAGA GAACCGGTTG GGCCTAATAA TTGTTCTGAG GTGAATTAAT TTGCTGATTA
TATCATTTTG TCGTGTGTTA GGTGTACTGT ATAGAAATGA TTAAGGATTA TATATACTTC ATTTTTAAGT ATATTATTCT
GTATCTTATG TACTTCATTC ATTGTTAATA CATATGGAGT CATGAAATGT ATTTCATTCT ATAAAAAAGG AGAGGATGAG
ATGGTACATC AGCATGTTTT ATTTATTAAT AGTCCAGTCT TCAGATGGTG AAGGTACATT GACTTCTCAG GTTGGATTAG
TTCTGAGTTA TTGTGATGTA TTTTCTGTTT CCTTAGCGAA TAGTGTCCGC TTGTGTCATT GGATGAATAA AGTTAAACAA
TATGGATGCT AAGCAGTCTT TTATACAGGC T

>Vigan.08G200500.01
ATGGCGCATT CTCATTATCT TCATCATATT CCTTCGTTAC CATCTTTATC TGCATCTCTC ACTCCCCAAA CTCCTTCGCT
TCCCGTTCGG CGATTACAGC TCAAGACGCT GTCGTATCAT GCCCCTTCAC ACGCCACTTT CAGCTCTTTC AAACCTCTTC
ATTTTGCTCT CTCTGGAGCC CTCTCACTTG GGTTATTATT CGGAGGAATT CGGGTGGCCG AGGCTGCAAA AGTAGGTGTG
AACAAGCCGG AGTTGCTCCC CAAGGAGTTT ACCTCTGTCA TTGATGTTGC TGGGTTCCTC TCTGATGGAC AGGAGAAAAG
ATTAGCAGCA GAGATTGCTG CTCTTGAAGC AGATACCGGA TTCAAGTTAA GGGTTTTGGC CCAGAACTAT CCTGATACGC
CAGGTTTGGC TGTCAAAGAT TTCTGGCAGG TAGATGACAG AACAGTTGTC TTTGTTGCTG ATCCCACATT TGGTAATATT
TTGAATTTCA ACGTTGGTGC TTCAGTTGAT TTGGACATTC CACGTAGCTT TTGGAGTCGC TTGGCTGGGA AATATGGGAA
CATTTTCTAT TGGAAAGAAA AGGGGGAAGA TGCATCTATT GAAGCAGCAG TAACGGCAAT TTCTAATTGC CTGAGAGAAC
CGGTTGGGCC TAATAATTGT TCTGAGGTGA ATTAA

>Vigan.08G200500.01
MAHSHYLHHI PSLPSLSASL TPQTPSLPVR RLQLKTLSYH APSHATFSSF KPLHFALSGA LSLGLLFGGI RVAEAAKVGV
NKPELLPKEF TSVIDVAGFL SDGQEKRLAA EIAALEADTG FKLRVLAQNY PDTPGLAVKD FWQVDDRTVV FVADPTFGNI
LNFNVGASVD LDIPRSFWSR LAGKYGNIFY WKEKGEDASI EAAVTAISNC LREPVGPNNC SEVN*