GBrowse Details

Vigan.08G201800.01

Basic Information:
Name: Vigan.08G201800.01
Multiple alignment
Variant Information
Position: Chr08:17984876..17987012 (+ strand)
Length: 2137
Functional Information:
Description: Similar to zinc finger protein 593. [XP_008462489.1, Cucumis melo]
GO: Cellular Component: nucleus (GO:0005634)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2-type matrin (IPR000690)
Zinc finger, U1-type (IPR003604)
Zinc finger, C2H2 (IPR007087)
Zinc finger, double-stranded RNA binding (IPR022755)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.69,32.17,24.29,27.65,35.19,28.69,38.19,21.06
Arabidopsis thaliana homolog: AT2G36930.1
Automatic updates:
Name: NM_001248272 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527632 (LOC100527632), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251749 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499707 (LOC100499707), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:17984876..17985102 (+ strand)
Length: 227
Type: five_prime_UTR
Position: Chr08:17985103..17985296 (+ strand)
Length: 194
Type: CDS
Position: Chr08:17985910..17985972 (+ strand)
Length: 63
Type: CDS
Position: Chr08:17986716..17986818 (+ strand)
Length: 103
Type: CDS
Position: Chr08:17986819..17987012 (+ strand)
Length: 194
Type: three_prime_UTR


>Vigan.08G201800.01
GCAGGAGCCC ATAAACTAAT TAGACTGGGC CAGGTAGTTC AGCAGGCCCA TTTTGACACT CGTGTTTCTC ATACATCAGT
TGATTTTGTG TTAAGAAGAG AGAGATTTGA TTTGAGGCGC CGTCGTTTCA CTCTCCACCA TCATCTTCAG AAGAAAAACC
CTAACAACAA GTTGCAAGGG AAGTGGAATC AGAGCTGTGA AACCCTAACT GTTGTGAAAC GCTAATAATG GGAGGAAAAT
GTCCGCACCG GAACGTGAAG AAAAGAAGAT ATTCTCACAA GACAGCACGC CGAACCAAAT TTGAGTTGAA AGGCGACGAT
ATGGTTTACG CGCAGCTAAA CAAACCCGAT GAAGAGATAA CCCCTTTACC CGTAGACGAA GATTTGCCTG GGATGGGACA
GTACTATTGC CCTCACTGCG ATCGGTACTT TTCCAATATA ACTGTGAGGG ATGAACACTT TAAGACCAAA CGACACAAGA
AGCGTGTAAA AATAATGATG GGTCCTGCAC CACATACTCA ACTTGATGCC GAATTAGCTG CAGGGATGGG TATGCCAGAC
AATGGACCAA AGCTGATGTC TATGTAACTT CGTTTTCGGT AGTGGGTAGA AAGATTGTAA CACTACAAAA GCAATATTAA
ATTTTGAATG CTATATTTTT CTTATTAATT CCTTTGTTTT GTCTAATAGA TGAAATGTTG GAAAACAACA CTTTAGAGAG
TTTGAATTGT AGTTACTGGT GATTTTGGAT AATCGGTCAT ATGGAATATA GTGGTTTTTG G

>Vigan.08G201800.01
ATGGGAGGAA AATGTCCGCA CCGGAACGTG AAGAAAAGAA GATATTCTCA CAAGACAGCA CGCCGAACCA AATTTGAGTT
GAAAGGCGAC GATATGGTTT ACGCGCAGCT AAACAAACCC GATGAAGAGA TAACCCCTTT ACCCGTAGAC GAAGATTTGC
CTGGGATGGG ACAGTACTAT TGCCCTCACT GCGATCGGTA CTTTTCCAAT ATAACTGTGA GGGATGAACA CTTTAAGACC
AAACGACACA AGAAGCGTGT AAAAATAATG ATGGGTCCTG CACCACATAC TCAACTTGAT GCCGAATTAG CTGCAGGGAT
GGGTATGCCA GACAATGGAC CAAAGCTGAT GTCTATGTAA 

>Vigan.08G201800.01
MGGKCPHRNV KKRRYSHKTA RRTKFELKGD DMVYAQLNKP DEEITPLPVD EDLPGMGQYY CPHCDRYFSN ITVRDEHFKT
KRHKKRVKIM MGPAPHTQLD AELAAGMGMP DNGPKLMSM*