GBrowse Details

Vigan.08G203400.01

Basic Information:
Name: Vigan.08G203400.01
Multiple alignment
Variant Information
Position: Chr08:18193359..18195646 (+ strand)
Length: 2288
Functional Information:
Description: Similar to Lesion inducing protein. [U5TZH0, Phaseolus vulgaris]
InterPro: HR-like lesion-inducer (IPR008637)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.69,31.97,84.79,35.13,65.18,92.21,149.26,53.79
Arabidopsis thaliana homolog: AT4G14420.1
Automatic updates:
Name: NM_001248064 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500227 (LOC100500227), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250663 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative HR-like lesion-inducing protein (LOC100305592), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:18193359..18193470 (+ strand)
Length: 112
Type: five_prime_UTR
Position: Chr08:18193471..18193538 (+ strand)
Length: 68
Type: CDS
Position: Chr08:18194295..18194409 (+ strand)
Length: 115
Type: CDS
Position: Chr08:18194672..18194761 (+ strand)
Length: 90
Type: CDS
Position: Chr08:18194873..18194971 (+ strand)
Length: 99
Type: CDS
Position: Chr08:18195070..18195168 (+ strand)
Length: 99
Type: CDS
Position: Chr08:18195169..18195646 (+ strand)
Length: 478
Type: three_prime_UTR


>Vigan.08G203400.01
AAATCTGTTC TTTTTCTTGC TTTTTCTGTC CGAGGAAAAG TAGAAGAGAA ACACAGTACC CTAGATTTGC CCTTCTCTGC
TTCGGAAGAA AGTGAAACAG AACAAAATTG CAATGGCTTT CGCTTCTTTC CTTGGCAGAG TTCTCTTCGC TTCCGTCTTT
ATACTCTCTG CTTACCAAGA ATTTAATGAG TTTGGAGTTG ATGGTGGGCC TGCAGCGAAA GCACTCAGAC CAAAGTTTGA
TGCATTTACA CATCGCGTGC ATTCTCAAGT TGGCTTTCAA CTCCCACAGA TTGATACGCA AATTTTAATT GCTGGGGCTA
TTGCTCTCAA GGGCCTTGGA GGAGTTCTTT TCATATTTGG CAGCTCTTTC GGAGCTCTCC TTCTGCTCCT GCATCAGCTT
ATTGCTACTC CTATCCACTA TGATTTTTAC AATTATGAGA GCGAGGACAA AGAATTTACT CAACTTTTCA TCAAATTTAC
ACAGAATATG GCTCTCTTTG GGGCTCTGTT GTTTTTCATC GGCATGAAGA ACTCCATCCC TAAAAGGCAA CACAAGAAGG
CACCGAAAAC AAAAACCTAT TAGTACCAGC AGCATTGGAG GACCCCGTTT CAAGGAGGGG ATGCTGTTGG CTCTTAATCA
TATCCTCACA AATGTACCAG GATTTGGGTT GGATACTTCT CTGGTTCAGA ATCAGTCTTC CTCTCCCTTT GAGTTTTGTA
GTTTTGGCTT CACTTGGATT AAATTATTGG CTATTATTTT GTATGATCTT GTCATCACGG CTTTAGGAAC TATCTTCCAG
TTAGACTTGT CTGTTAAAAA TGAAAACAAA AGGATGAGAA ACCTTGGCTC TTGAACTTCA GAATGCCAAT TTCATTCTGT
TCTATCTTTC TTGATGTAAG GTCTTCAAAG CCTGGCATTG GAAGTTATGT AACTTAACTG GAGTTATCCA CTTCAGCCAT
GAATTTGTGT GCCCCATCTG ATTCTTGTGC TCATTTTATT TTTACCACCT ACCTGTTATT TTTCACTTCC AAAACAAACT
TTAAATGTGT TGGAATCTAA C

>Vigan.08G203400.01
ATGGCTTTCG CTTCTTTCCT TGGCAGAGTT CTCTTCGCTT CCGTCTTTAT ACTCTCTGCT TACCAAGAAT TTAATGAGTT
TGGAGTTGAT GGTGGGCCTG CAGCGAAAGC ACTCAGACCA AAGTTTGATG CATTTACACA TCGCGTGCAT TCTCAAGTTG
GCTTTCAACT CCCACAGATT GATACGCAAA TTTTAATTGC TGGGGCTATT GCTCTCAAGG GCCTTGGAGG AGTTCTTTTC
ATATTTGGCA GCTCTTTCGG AGCTCTCCTT CTGCTCCTGC ATCAGCTTAT TGCTACTCCT ATCCACTATG ATTTTTACAA
TTATGAGAGC GAGGACAAAG AATTTACTCA ACTTTTCATC AAATTTACAC AGAATATGGC TCTCTTTGGG GCTCTGTTGT
TTTTCATCGG CATGAAGAAC TCCATCCCTA AAAGGCAACA CAAGAAGGCA CCGAAAACAA AAACCTATTA G

>Vigan.08G203400.01
MAFASFLGRV LFASVFILSA YQEFNEFGVD GGPAAKALRP KFDAFTHRVH SQVGFQLPQI DTQILIAGAI ALKGLGGVLF
IFGSSFGALL LLLHQLIATP IHYDFYNYES EDKEFTQLFI KFTQNMALFG ALLFFIGMKN SIPKRQHKKA PKTKTY*