GBrowse Details

Vigan.08G206500.01

Basic Information:
Name: Vigan.08G206500.01
Multiple alignment
Variant Information
Position: Chr08:18505241..18533072 (+ strand)
Length: 27832
Functional Information:
Description: Similar to Serine-type peptidase. [T2DMV3, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Cellular Component: membrane (GO:0016020)
Molecular Function: serine-type peptidase activity (GO:0008236)
InterPro: Peptidase S26A, signal peptidase I (IPR000223)
Peptidase S24/S26A/S26B/S26C (IPR015927)
Peptidase S24/S26, beta-ribbon domain (IPR028360)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.78,17.63,16.01,9.76,17.45,12.43,17.43,9.47
Arabidopsis thaliana homolog: AT2G31140.1
Automatic updates:
Name: NM_001249872 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500100 (LOC100500100), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254337 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mitochondrial inner membrane protease subunit 1-like (LOC100785852), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:18505241..18505374 (+ strand)
Length: 134
Type: five_prime_UTR
Position: Chr08:18505375..18505446 (+ strand)
Length: 72
Type: CDS
Position: Chr08:18506932..18507101 (+ strand)
Length: 170
Type: CDS
Position: Chr08:18531064..18531247 (+ strand)
Length: 184
Type: CDS
Position: Chr08:18531918..18532024 (+ strand)
Length: 107
Type: CDS
Position: Chr08:18532357..18532438 (+ strand)
Length: 82
Type: CDS
Position: Chr08:18532439..18533072 (+ strand)
Length: 634
Type: three_prime_UTR


>Vigan.08G206500.01
ATGCAAAATG CTTGATATCA AGAAATAGCG AGAAATTCTT TTTGGGGTTT ATTAGAGGAG AAGAAGAGAA GACAGTACCG
CCTCTTCTGC TGCGTTCTAG TTCTGACACA ATTAAACTCT GTCTGCACCC TGCAATGGTT TCGCTATCGA CATGGTTTCG
CTATATTGCC CACAAAGTCG ATTACTCCGT CTCCCTCGGC TGGAAGAACT ATAAAGGAGG TAACATATCA GACAAAGAGG
CAAGGGACAT GATTTGGAAA AACTTCTTTC AAGGAAGGAT GACGTACTTG CACTGGAATA AAGGAGAGGA GATGGCCCCT
GCTATTGATG GAAAAGCGGT AACTCTTGTT CGGAAATTGC CAACTGCAGA CCCAACGCGT GTTTTTGTAG GAGATGTTGT
GGTTTTGAAG GATCCTGAGA AGCCAGATAA CTACCTAGTC AGAAGATTAA CTGCGATTGA AGGTTATGAA ATGGTTTCTA
CTGATGAAAA TGATGAACCC TTTACTCTTG AGAAGGACCA ATGCTGGGTT GTAGCTGAAA ATGAAAAATT GAAAGCGAAG
GAAGCGAATG ATAGTCGAAC ATTTGGTCCA GTTCAGATGA CAGACATTGT AGGCAGAGTC ATATATTGCC TGCGAAGCGC
TGTAGACCAT GGCCGTGTAC AAAACAGTTA TTTTGGCATG CGAAAGGATA CACCAGTGTT GGAAGTGGAA CTTGATGTTG
ATGAGATGGC AAAGAGTCAC AAAACCTGAG CTTTTTGTCC CGGGAAGCAC TAACTACTTT ACTTTATGCA TTCCCAAGTT
TCTTCTTGTG GATTTTCCTG GAAGCACAGA TGAAGAATAA AGTAGATGAT TTTTAAATTG TTGCAATGGG ATGGTGATGT
TATATGGCTA TCCTATGCAC TGCATCTTAG GCGATTGGTT CGTTCTTCCC AACACAAACA TGATTGTAAG CTAAGTTCAA
GCAAGGACTA TTCGTAAGTC ATTGGTTTGG CTCTAAAATT GACTAAATTT TGGTCTATTT GTTAAAGCTC ACAAAAGGCT
GCACCATTAG AAATATCATG GTTTCAGGTA TTTTCTATTC CTTTGTTGCT CGATGACAAT TATGTAGAAT TGTGAAGTTC
CAGTGTGACT GGGCTCACGT TTTGAATTTG AAGGGGATAC TGTTTGATAT CTATTTTCTC TACTCAGTGA GCTCATGAAA
AGAGTTTCAG TTAAAATTGG CTGTATCACA CGCACATAAG CATGTTCTTG TTTTAACTCG CTCAAAATTA TTTCCTTTTA
TTTTATTTTC CTCTTTTGCT CCCAATTTAT GGTTAATGGT GCACTCACAA ACGTTCATTT TCCATCTAAA ACTTAGTTTT
TACTTCATTA AGGAGAATAA AAT

>Vigan.08G206500.01
ATGGTTTCGC TATCGACATG GTTTCGCTAT ATTGCCCACA AAGTCGATTA CTCCGTCTCC CTCGGCTGGA AGAACTATAA
AGGAGGTAAC ATATCAGACA AAGAGGCAAG GGACATGATT TGGAAAAACT TCTTTCAAGG AAGGATGACG TACTTGCACT
GGAATAAAGG AGAGGAGATG GCCCCTGCTA TTGATGGAAA AGCGGTAACT CTTGTTCGGA AATTGCCAAC TGCAGACCCA
ACGCGTGTTT TTGTAGGAGA TGTTGTGGTT TTGAAGGATC CTGAGAAGCC AGATAACTAC CTAGTCAGAA GATTAACTGC
GATTGAAGGT TATGAAATGG TTTCTACTGA TGAAAATGAT GAACCCTTTA CTCTTGAGAA GGACCAATGC TGGGTTGTAG
CTGAAAATGA AAAATTGAAA GCGAAGGAAG CGAATGATAG TCGAACATTT GGTCCAGTTC AGATGACAGA CATTGTAGGC
AGAGTCATAT ATTGCCTGCG AAGCGCTGTA GACCATGGCC GTGTACAAAA CAGTTATTTT GGCATGCGAA AGGATACACC
AGTGTTGGAA GTGGAACTTG ATGTTGATGA GATGGCAAAG AGTCACAAAA CCTGA

>Vigan.08G206500.01
MVSLSTWFRY IAHKVDYSVS LGWKNYKGGN ISDKEARDMI WKNFFQGRMT YLHWNKGEEM APAIDGKAVT LVRKLPTADP
TRVFVGDVVV LKDPEKPDNY LVRRLTAIEG YEMVSTDEND EPFTLEKDQC WVVAENEKLK AKEANDSRTF GPVQMTDIVG
RVIYCLRSAV DHGRVQNSYF GMRKDTPVLE VELDVDEMAK SHKT*