GBrowse Details

Vigan.08G217500.01

Basic Information:
Name: Vigan.08G217500.01
Multiple alignment
Variant Information
Position: Chr08:19771543..19776892 (+ strand)
Length: 5350
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYN0, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Succinyl-CoA synthetase, beta subunit (IPR005809)
ATP-citrate lyase/succinyl-CoA ligase (IPR005811)
ATP-grasp fold (IPR011761)
ATP-grasp fold, succinyl-CoA synthetase-type (IPR013650)
ATP-grasp fold, subdomain 1 (IPR013815)
ATP-grasp fold, subdomain 2 (IPR013816)
Succinyl-CoA synthetase-like (IPR016102)
Succinyl-CoA synthetase, beta subunit, conserved site (IPR017866)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.92,21.90,60.53,43.32,79.25,36.75,70.03,40.01
Arabidopsis thaliana homolog: AT2G20420.1
Automatic updates:
Name: NM_001364202 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (LOC100527938), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:19771543..19771717 (+ strand)
Length: 175
Type: five_prime_UTR
Position: Chr08:19771718..19771819 (+ strand)
Length: 102
Type: CDS
Position: Chr08:19772075..19772185 (+ strand)
Length: 111
Type: CDS
Position: Chr08:19772397..19772508 (+ strand)
Length: 112
Type: CDS
Position: Chr08:19772754..19772818 (+ strand)
Length: 65
Type: CDS
Position: Chr08:19773476..19773553 (+ strand)
Length: 78
Type: CDS
Position: Chr08:19773678..19773752 (+ strand)
Length: 75
Type: CDS
Position: Chr08:19773849..19774001 (+ strand)
Length: 153
Type: CDS
Position: Chr08:19774085..19774219 (+ strand)
Length: 135
Type: CDS
Position: Chr08:19775384..19775548 (+ strand)
Length: 165
Type: CDS
Position: Chr08:19775708..19775830 (+ strand)
Length: 123
Type: CDS
Position: Chr08:19776260..19776331 (+ strand)
Length: 72
Type: CDS
Position: Chr08:19776420..19776497 (+ strand)
Length: 78
Type: CDS
Position: Chr08:19776498..19776892 (+ strand)
Length: 395
Type: three_prime_UTR


>Vigan.08G217500.01
GTTTTTTCAC TTTTTTTTTT AAAAACAAAG AAATTGTTAG GGTCTTGGCG TCTGCCACAG ACTGCGCAGT GTTTGAACGT
TGAAGGGAGC ATAAAACGCA GAGGTTTTCT CACTGTTCAA ACGAATCGAA TTCCATTTGA TCGTGCCACT CTCGATCTCC
AAATCCGCAA CAACAATGGT GAGGGGATTG CTCAACAAGC TCGTCTCTCG CTCTCTCTCC GTCGCTGGAA AATGGCAGCA
CCACCAACTC CGCCGCCTCA ACATCCACGA GTACCAGGGC GCTGAGTTGA TGGGCAAACA TGGTGTGAAC GTTCCCAGGG
GCGTGGCTGT TTCCTCTGTT GAAGAGGTCA GAAAGGCCAT TAAGGACTTT TTTCCTAATG AAAAAGAGTT GGTGGTTAAG
AGTCAAATAT TAGCCGGTGG AAGAGGCTTG GGAACTTTCA AAAGCGGCCT TCAGGGAGGA GTGCACATTG TTAAGACTGA
GCAGGTTGAA GACTTAGCTG GGAAGATGCT TGGACAGATA CTAGTTACCA AACAAACTGG TCCTCAGGGC AAAATAGTTA
GCAAGGTTTA CTTATGCGAA AAGCTTTCTC TTGTAAATGA GATGTACTTT GCTATAACTC TGGATCGTAC AACTGCTGGT
CCAATTATAA TTGCTTGTAG CAAAGGAGGA ACCAGCATTG AAGACCTTGC AGAGAAATTT CCAGACATGA TTATAAAGGT
ACCTGTCGAT GTTTTTGAAG GAATTACTGA TGAAGCTGCT GCAAAGGTTG TTGATGGTTT GGCTCCCAAA GGAGCTGATA
GAAATAAGTC AATCGAACAA GTGAAGAATT TGTATAAACT TTTTATTGAT TGTGACTGCA CTCTCTTGGA AATCAATCCC
ATAGCAGAGA CAGCGGATAA TCAATTGGTG GCTGCTGATG CTAAGTTGAA TTTTGACGAT AATGCTGCAT ATCGTCAAAA
AGAGATATTT GCTCTCCGTG ATACAACACA AGAGGACCCT CGAGAGGTGA CTGCTGCAAA GGCAGACTTA AATTATATTG
GGTTAGATGG AGAAATTGGC TGCATGGTGA ATGGAGCCGG TTTGGCAATG GCCACAATGG ATATAATTAA ACTGCATGGG
GGTACTCCTG CCAATTTTCT GGATGTTGGT GGGAATGCCT CTGAAGGTCA GGTGATTGAG GCATTTAAAA TATTGACTGC
TGATGACAAA GTGAAGGCGA TTTTGGTTAA TATTTTTGGT GGTATAATGA AGTGTGATGT TATAGCAAGT GGAATAGTGA
ATGCTGCAAA AGAGGTTGCA TTGAAAGTAC CAGTAATTGT TCGTCTGGAA GGCACCAATG TTGATCAAGG AAAAAGAATT
TTGAAGGAAA GTGGTATGGC ATTAATAACT GCTGAAGATT TAGATGATGC TGCCCAAAAA GCAGTGAAAG CTGCTTACAA
ATGAAGAGTT GCTTCTCTTT AGATTTAAAA TTCGGTTTAG TTATAACATT ATTCTTCGTA TTAAAACATT GAGGAGAAAG
GGATTGATGC AAGAAAGCCT TAGTGATTTC ATTTTGGCTG CACTGCTTAT CAAAGAGTTT CCAATAAGTT AGTGATTTCC
AACTTTTGTA GTTCGTGTGG GTTGATGCAC GTGGATTACT TTTTGGCTTC TCTCACAATT CAAGATACTG GTCCCTTCCT
TTCTGATTTT TCCTGGTTGA AGATACTACT CTATATTATG CATATAACAT GGGAAATACT TGTTTATCTG TTAGACATGG
TCGTTCATTG AGAGGCCAAA ACCTGATTCT AAATCGAGGT TATTCAATTT TGGATGTTTA ATGACAAATG TCTTTCTTA

>Vigan.08G217500.01
ATGGTGAGGG GATTGCTCAA CAAGCTCGTC TCTCGCTCTC TCTCCGTCGC TGGAAAATGG CAGCACCACC AACTCCGCCG
CCTCAACATC CACGAGTACC AGGGCGCTGA GTTGATGGGC AAACATGGTG TGAACGTTCC CAGGGGCGTG GCTGTTTCCT
CTGTTGAAGA GGTCAGAAAG GCCATTAAGG ACTTTTTTCC TAATGAAAAA GAGTTGGTGG TTAAGAGTCA AATATTAGCC
GGTGGAAGAG GCTTGGGAAC TTTCAAAAGC GGCCTTCAGG GAGGAGTGCA CATTGTTAAG ACTGAGCAGG TTGAAGACTT
AGCTGGGAAG ATGCTTGGAC AGATACTAGT TACCAAACAA ACTGGTCCTC AGGGCAAAAT AGTTAGCAAG GTTTACTTAT
GCGAAAAGCT TTCTCTTGTA AATGAGATGT ACTTTGCTAT AACTCTGGAT CGTACAACTG CTGGTCCAAT TATAATTGCT
TGTAGCAAAG GAGGAACCAG CATTGAAGAC CTTGCAGAGA AATTTCCAGA CATGATTATA AAGGTACCTG TCGATGTTTT
TGAAGGAATT ACTGATGAAG CTGCTGCAAA GGTTGTTGAT GGTTTGGCTC CCAAAGGAGC TGATAGAAAT AAGTCAATCG
AACAAGTGAA GAATTTGTAT AAACTTTTTA TTGATTGTGA CTGCACTCTC TTGGAAATCA ATCCCATAGC AGAGACAGCG
GATAATCAAT TGGTGGCTGC TGATGCTAAG TTGAATTTTG ACGATAATGC TGCATATCGT CAAAAAGAGA TATTTGCTCT
CCGTGATACA ACACAAGAGG ACCCTCGAGA GGTGACTGCT GCAAAGGCAG ACTTAAATTA TATTGGGTTA GATGGAGAAA
TTGGCTGCAT GGTGAATGGA GCCGGTTTGG CAATGGCCAC AATGGATATA ATTAAACTGC ATGGGGGTAC TCCTGCCAAT
TTTCTGGATG TTGGTGGGAA TGCCTCTGAA GGTCAGGTGA TTGAGGCATT TAAAATATTG ACTGCTGATG ACAAAGTGAA
GGCGATTTTG GTTAATATTT TTGGTGGTAT AATGAAGTGT GATGTTATAG CAAGTGGAAT AGTGAATGCT GCAAAAGAGG
TTGCATTGAA AGTACCAGTA ATTGTTCGTC TGGAAGGCAC CAATGTTGAT CAAGGAAAAA GAATTTTGAA GGAAAGTGGT
ATGGCATTAA TAACTGCTGA AGATTTAGAT GATGCTGCCC AAAAAGCAGT GAAAGCTGCT TACAAATGA

>Vigan.08G217500.01
MVRGLLNKLV SRSLSVAGKW QHHQLRRLNI HEYQGAELMG KHGVNVPRGV AVSSVEEVRK AIKDFFPNEK ELVVKSQILA
GGRGLGTFKS GLQGGVHIVK TEQVEDLAGK MLGQILVTKQ TGPQGKIVSK VYLCEKLSLV NEMYFAITLD RTTAGPIIIA
CSKGGTSIED LAEKFPDMII KVPVDVFEGI TDEAAAKVVD GLAPKGADRN KSIEQVKNLY KLFIDCDCTL LEINPIAETA
DNQLVAADAK LNFDDNAAYR QKEIFALRDT TQEDPREVTA AKADLNYIGL DGEIGCMVNG AGLAMATMDI IKLHGGTPAN
FLDVGGNASE GQVIEAFKIL TADDKVKAIL VNIFGGIMKC DVIASGIVNA AKEVALKVPV IVRLEGTNVD QGKRILKESG
MALITAEDLD DAAQKAVKAA YK*