VIGGS:GBrowse

Vigan.08G221100.01

Basic Information:

Name:	Vigan.08G221100.01 Multiple alignment Variant Information
Position:	Chr08:20049559..20051104 (+ strand)
Length:	1546

Functional Information:

Description:	Similar to Photosystem II reaction center Psb28 protein. [V7BFP1, Phaseolus vulgaris]
GO:	Biological Process: photosynthesis (GO:0015979)
	Cellular Component: photosystem II (GO:0009523)
	Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
	Cellular Component: membrane (GO:0016020)
InterPro:	Photosystem II Psb28, class 1 (IPR005610)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.14,1.68,50.84,138.53,1.16,77.04,5.52,92.50

Automatic updates:

Name:	NM_001248876 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306491 (LOC100306491), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:20049559..20049592 (+ strand)
Length:	34
Type:	five_prime_UTR

Position:	Chr08:20049593..20049665 (+ strand)
Length:	73
Type:	CDS

Position:	Chr08:20050376..20050842 (+ strand)
Length:	467
Type:	CDS

Position:	Chr08:20050843..20051104 (+ strand)
Length:	262
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G221100.01
TTGTTGTGAA CTACATTTCT CTCTCCTTTT GGCAATGGCA GCTCTGCACT CTCTTGCATT GTCCTCTCCG TTCTCCAGCT
CACTTCACAA ACCACGCTCA TACTCAGTTC CATGTTCAAT TGTTCATCAA AGTAGAAACT CCTCATTCAA TGGGCAAACT
TTGCGGATGC CATATTTGAG GTTACGTATG GTAACACAAA GCAGTGCCAT GCAGATGCCT GTTATGATGA TGTTGAAACC
AAAGATACAG TTCATCCAGG GAACTGATGA GCAAACAATT CCTGATGTGA GGCTGACAAA ATCAAGGGAT GGAACAAATG
GCATGGCTAT CTTCACATTT GATCAACCTT CAGTTTTCGA TTCTTCAGGT GAAATAGGTG ATATCACTGG ATTTTACATG
ATTGATGAAG AAGGAGTCCT TCAGTCAGTT GATGTAAATG CTAAATTTGT GAATGGTAAG CCCTCAATAA TTGAAGCCAA
GTACATAATG CGGAGTCCAA GGGAGTGGGA TAGATTCATG AGATTCATGG AGCGATACTC TAATGCAAAT GGTTTACAAT
TCATCAAAAA ATGAGTTAAT CTTTTATTCT TTTGCCCTTT TATGTGCATG TAACTTCAAT TTGCATACTG ATCATGTCTT
TTCTGGCACG AGATTTTATG AAATTTTGCC TCTCCTTCAA CTTGGAAAGG TCATCATCAT TCAATGACTT CCTTTCTGCT
ATTCTGTTTT GAATAAAGAA ACTGTGCCAG GAAATATGCT ATTCATCATA TGTTTCCTTT TAATAGCTTG TTCATGGATT
ATTTTGTAAA GGCTTAAATC CAATTTTGAT TGCTAT

[show][hide][copy]CDS

>Vigan.08G221100.01
ATGGCAGCTC TGCACTCTCT TGCATTGTCC TCTCCGTTCT CCAGCTCACT TCACAAACCA CGCTCATACT CAGTTCCATG
TTCAATTGTT CATCAAAGTA GAAACTCCTC ATTCAATGGG CAAACTTTGC GGATGCCATA TTTGAGGTTA CGTATGGTAA
CACAAAGCAG TGCCATGCAG ATGCCTGTTA TGATGATGTT GAAACCAAAG ATACAGTTCA TCCAGGGAAC TGATGAGCAA
ACAATTCCTG ATGTGAGGCT GACAAAATCA AGGGATGGAA CAAATGGCAT GGCTATCTTC ACATTTGATC AACCTTCAGT
TTTCGATTCT TCAGGTGAAA TAGGTGATAT CACTGGATTT TACATGATTG ATGAAGAAGG AGTCCTTCAG TCAGTTGATG
TAAATGCTAA ATTTGTGAAT GGTAAGCCCT CAATAATTGA AGCCAAGTAC ATAATGCGGA GTCCAAGGGA GTGGGATAGA
TTCATGAGAT TCATGGAGCG ATACTCTAAT GCAAATGGTT TACAATTCAT CAAAAAATGA

[show][hide][copy]PROTEIN

>Vigan.08G221100.01
MAALHSLALS SPFSSSLHKP RSYSVPCSIV HQSRNSSFNG QTLRMPYLRL RMVTQSSAMQ MPVMMMLKPK IQFIQGTDEQ
TIPDVRLTKS RDGTNGMAIF TFDQPSVFDS SGEIGDITGF YMIDEEGVLQ SVDVNAKFVN GKPSIIEAKY IMRSPREWDR
FMRFMERYSN ANGLQFIKK*