GBrowse Details

Vigan.08G223200.01

Basic Information:
Name: Vigan.08G223200.01
Multiple alignment
Variant Information
Position: Chr08:20285390..20290193 (- strand)
Length: 4804
Functional Information:
Description: Similar to Uncharacterized protein. [I1LYS6, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.89,14.49,8.32,13.47,9.74,14.87,10.77,12.26
Arabidopsis thaliana homolog: AT2G20230.1
Automatic updates:
Name: NM_001255178 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100816955 (LOC100816955), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:20285390..20286259 (- strand)
Length: 870
Type: three_prime_UTR
Position: Chr08:20286260..20286301 (- strand)
Length: 42
Type: CDS
Position: Chr08:20287033..20287236 (- strand)
Length: 204
Type: CDS
Position: Chr08:20288874..20288978 (- strand)
Length: 105
Type: CDS
Position: Chr08:20289084..20289164 (- strand)
Length: 81
Type: CDS
Position: Chr08:20289479..20289578 (- strand)
Length: 100
Type: CDS
Position: Chr08:20289845..20290044 (- strand)
Length: 200
Type: CDS
Position: Chr08:20290045..20290193 (- strand)
Length: 149
Type: five_prime_UTR


>Vigan.08G223200.01
AAAGAATAGG AAATAGTGGA AGGCAAAGTG TGGAGGAGAA GGAGATCAGC GAATGTGGTG TGGTCGTCGG AGTTGCCGAT
AAACAAATTC AGTGAAAATC TTGAATTCAG CTTACGCAGG AAAATAATAA GGGAGCCCTA ATAAATACGA TGCGTTTCAA
TACCTGTCAC GTTTCGCTCG CTTTCGTTCT CAAATTCCTC AATTTCCTTC AATCCTTCGT TGGCATTTCC ATTTTGCTCT
ATTCCATATG GATGTTCAAC GAATGGGAGC ATCGTCTTCC TCCTCCTCCT CTTCCTCACG CTTTCGATTT CTATCTCAAT
CTCGCTTCAA TCGTTCTCCC CGCCCCATGG TTTATCTACG CTTTCTTGGG AGTGGGAATT TTGGTGTTAT GCATTTCTCT
CTTGGGTTGC ATTGCAGCTG AAATGATTAA TGGTTGCTGC TTGTGTTTTT ACACTTTACT CATCGCGGTG CTTCTTCTGC
TGGAAGCTTC TCTGGTGGGA TTCATTGCAC TTGATAGTGA TTGGGAGAAG GATATTCCAC TTGATCCAAC CGGTCGACTT
GACGAGCTTC GAACTTTCAT CGAAGATAAT ATAGATATCT GTACTTGGGT TGGCATTACT GTTCTCGTGG TTCAGGCATT
GGCTCTACTA CTGGCATTAA TTCTGCGAGC CACCGTGTCT ACCCGGGGGA CTGATTTTGA TTATGAGGAT GAGTGTGATG
CTAGGGGTAG AAGTTGGGAA CCCCTACTAA ATCCTCAATC TGGCCAACCA TCTGGGTCTG GCAAAGTTGA TAATAGAGGA
AATCACTCGG ATATTTGGAG CTCACGGATG AGAGAAAAGT ACGGATTGAA CCATGGTGAT AAGAGCACCT ACCAACCATG
AATTTCAGGC AATCACCGCT ACTAGACATC AATCAATTCA ATGATGTGTC GACATTTGCG TACATTCATG TATATCTTTG
GTTCTAATGT TGTACTTACT TTCATATTTC AGGAAAAATT ATGATGTAAG CAAAATATAG TGGTGGTATA TGTGTTGTAA
AACCAAACAA GCTACCGATT GAAGTTTAAG AGTGTCTTGT ACTTAAATAG CGTAGCATAA GAGAAAAATT AATAACAAAG
CTACATCACA AAGGACCCAA TGTAAGCACC TTCCTCGTGG CTCTACTGCT AGTGCAGTCT GCAGCACAGA ACTTTAGTTG
ACATTGCTCA ATGGCCACGC ATACAGCTAT ATACTTTGGA TATGGTGCAC GTGAAACATA CATCTCTCAT GTGTCGGTAT
TCATGTTTTT CTTTTCACAA AAAACAAATA TCATAATTTT GTATAAAATT TCAAAAAGCA AAATTGGTTG GTAAATATTG
CAGTGTGGAA AGCAAGTATC TTTGAGAACT TAGCATGACT CAACATCAAG TGAAATCGGA GGGCAAATTT TCAGTATCTT
ATGGTACTTA CGCTTGATCG CACACGATAT TTTTCTCTCT TAGTTTTATT TTAGAAATTA ATTTTAGAAT ATGAAAAATG
CTAGTTATAT AGGCATATGA TGATTTTAAT AAAATGGGAA TAATTTTTCC GTGTGAAGAT TTCAGTGAAT CAGGACAGTT
TGAATCCACA TGACAAATGG TAGTTACATG TTTCTCGGTG GTAAAATGCT GTGCCATTAT TATTAGCACT TGATTTGTAC
TATTCTGTTT CACACTAGGA GTTTTTATTT ATTTGTTTAT TTATTAATTT CCAGATAAAA GGAAGTGTTG C

>Vigan.08G223200.01
ATGCGTTTCA ATACCTGTCA CGTTTCGCTC GCTTTCGTTC TCAAATTCCT CAATTTCCTT CAATCCTTCG TTGGCATTTC
CATTTTGCTC TATTCCATAT GGATGTTCAA CGAATGGGAG CATCGTCTTC CTCCTCCTCC TCTTCCTCAC GCTTTCGATT
TCTATCTCAA TCTCGCTTCA ATCGTTCTCC CCGCCCCATG GTTTATCTAC GCTTTCTTGG GAGTGGGAAT TTTGGTGTTA
TGCATTTCTC TCTTGGGTTG CATTGCAGCT GAAATGATTA ATGGTTGCTG CTTGTGTTTT TACACTTTAC TCATCGCGGT
GCTTCTTCTG CTGGAAGCTT CTCTGGTGGG ATTCATTGCA CTTGATAGTG ATTGGGAGAA GGATATTCCA CTTGATCCAA
CCGGTCGACT TGACGAGCTT CGAACTTTCA TCGAAGATAA TATAGATATC TGTACTTGGG TTGGCATTAC TGTTCTCGTG
GTTCAGGCAT TGGCTCTACT ACTGGCATTA ATTCTGCGAG CCACCGTGTC TACCCGGGGG ACTGATTTTG ATTATGAGGA
TGAGTGTGAT GCTAGGGGTA GAAGTTGGGA ACCCCTACTA AATCCTCAAT CTGGCCAACC ATCTGGGTCT GGCAAAGTTG
ATAATAGAGG AAATCACTCG GATATTTGGA GCTCACGGAT GAGAGAAAAG TACGGATTGA ACCATGGTGA TAAGAGCACC
TACCAACCAT GA

>Vigan.08G223200.01
MRFNTCHVSL AFVLKFLNFL QSFVGISILL YSIWMFNEWE HRLPPPPLPH AFDFYLNLAS IVLPAPWFIY AFLGVGILVL
CISLLGCIAA EMINGCCLCF YTLLIAVLLL LEASLVGFIA LDSDWEKDIP LDPTGRLDEL RTFIEDNIDI CTWVGITVLV
VQALALLLAL ILRATVSTRG TDFDYEDECD ARGRSWEPLL NPQSGQPSGS GKVDNRGNHS DIWSSRMREK YGLNHGDKST
YQP*