GBrowse Details

Vigan.08G227900.01

Basic Information:
Name: Vigan.08G227900.01
Multiple alignment
Variant Information
Position: Chr08:21153280..21157000 (+ strand)
Length: 3721
Functional Information:
Description: Similar to sec-independent protein translocase protein TatB-like isoform X3. [XP_004500099.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.54,6.18,4.74,5.27,3.04,3.00,3.46,3.95
Arabidopsis thaliana homolog: AT5G43680.1
Automatic updates:
Name: NM_001355626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max sec-independent translocase TatB-like protein (LOC100791066), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21153280..21154820 (+ strand)
Length: 1541
Type: five_prime_UTR
Position: Chr08:21154821..21154881 (+ strand)
Length: 61
Type: CDS
Position: Chr08:21154969..21155090 (+ strand)
Length: 122
Type: CDS
Position: Chr08:21155545..21155680 (+ strand)
Length: 136
Type: CDS
Position: Chr08:21155784..21155839 (+ strand)
Length: 56
Type: CDS
Position: Chr08:21155924..21156119 (+ strand)
Length: 196
Type: CDS
Position: Chr08:21156654..21156763 (+ strand)
Length: 110
Type: CDS
Position: Chr08:21156764..21157000 (+ strand)
Length: 237
Type: three_prime_UTR


>Vigan.08G227900.01
CTCGAATGAT TGAAAAACTT AATATTCATG TACGTTGATT TCAAGGGTGA TTTTTAGTAA TCATTTGGGC TAAAGGCGTA
TCAAAATTAC CAAAACTGTA ATGAGAAAGG CGCCATCTTT TGCAGTATTT TGCATCAAGA TAATATCCAA ATAAAAGATT
TAGCAGTGAC AAGGCTTATG CAGACTATTC AGACTATGAA AATTGACTTC GTGAGAGAAA GAACAGTCAT TCCACTCTTC
CAATATTTTG TGGACAAAAT GCTCTTCTCT CCTATCTTCT TACGTTTCCA TATTTAATGT CACCATTCTT TCTTTCTAGA
TCTATCTTTG TTAAATATCC TACAAAGAAT TCACTGATCA TTGTGCAGAA TGCACAGACA GCACAAATGT AGTATGGAAA
CTTGTTTTTA ATGTTGTAAT ACTTAGGAGT TGTTCAAAAT GGAAGCTACC GAAATAAATC TATATGCATC AATACATTGA
ACTCTTGGAA CACTGAGACT GAAATTCTTG CTTCAATGTC ATGCATATGC GTATCATTTC TAATTCTCTG AATATCTTTG
GAATCTTGTA TGCATTTTCT CACAATATTT TTATACCATG TCCTTTCTAA TGTGTCATTT TATTAAATTG GACTTTTTTT
TTCTGCTTAT CTTAAGATAA GCCATGAAAA TTTGACATTC TTTATTCTAA TCACTTGAAC CCTCTCAATC ATGGCGGTGA
AGTGTGTTTT ATATATAGGT GCACTGTGGG TTAGAAATTA GCTGTTCTTT AAGTATTAAG TCATTCCATT AATAACTTAT
TTCCTTGTCT CTTTTTCAGT AACTAACTAT TTTCAGTAAA TTTAAAGATG ATTACTGATC GCCATTTTAG TGATAGATAT
AAAACAACTT GCATCATAAA AATTTGACAA TGATGAACAC ATATTCATGC TAATTTTTTA CTTAGGCATC TTCATTATTT
AGTGATGGCA CAGTCTGGTC TACAATTTTC TTCTAAAGCA TCCATTCGTC GTTCTCCAAA TACCACCAAT CCTGCTCATA
CAGTTGGAGA CGGTGGAACA CTGAAGCTAA TACACTCAAC CATCACAAAC TCCTGAACAT GTAGTATAAA GGAAATGGTA
AATAAAGGTG TGTGAAGAAG ACTATTTGAA ATGAGGGAAA AAATTAATGT CTAATAATGT AATTTCATAG ATGGAAGGGT
AAAGTGAATG TAGCAAGTAT GGAGTGTAAA TAGCAAAGGC ATGAAACAGA TCCCAATTTA TCTGGTGGGC TGTTTAGTTC
CCAGATTTGC TATTCTGCTG GGAAAACAAA TCGATTTCCC AAGGCGTTTC TTCTTCTCCC TTTTGTTTTA CCAATGTTCA
TTCATCAGCT AACTCTCTTG TAGGAAGCAC TGAAACTGTA ACAATGTCAT GCTAATTCTA TTCTTTTCAA TTTATGCTTT
CAGGTTAGTT AGCAATTCGA CTATAATTTC CGATTTGCCA TTTTATTGAA CTCTTTAGGG TTTCAAATGA ATTCGATTTT
TCTTCAAAAA GACAGTGAGA AATGCTGGGC TTTTCATATG GAGAAATATT TCTGTTGCTT GGAGCCACTG CTGCTCTGAT
AGGTCCAAAG GATTTACCAA TCATATCCAG AACAGCAGGG AGACTTGCTG GTAGAGCTAT TGGATATGTA CAATTGGCTC
GTGGTCAGTT TGAAAATGTT ATGCAGCAAT CCCAGGCTCG CCAGGTTCAT AAGGAACTGC AAGACACAAT GGCTCAGCTA
GATGCTATTC GTCATGAAAT TCGAAGCATA TCAATCATAA ATCCTGGCCC TTTGACACGA AGATTTGCTG ACAATCCTGA
CCAGACATCT ATCCCAAATG ACTGTAAGAA ACCAGAAGAT TCTGGAGAGA ATCACCCGAA TCCCACTGTT ATCAAGGACT
CAACTTCTGT GTCTTCTAAT TCATGCAATA TGCAAAATCA AGCAACCATT TACGCCAGAT TTGCAGAGTC CCCTTCCATA
AAGAATGAGT TGTCAGCAAT TAGTCCTGAA GTGGTGAAGA TAGATGACAA ACTGCAGCTT ACTGTCTTAC CCATATCCGC
TGAAAATGCT GGACTATTAC CAAATCGTGG GGCTGATGTG AAAGGATCTG ACATAGTTCT AGAAGCAATT TTGGAGGCAG
AGGTAGCTCA TAAAGCAAAG GAATTTTTTT CGCAGCCCCA AAACCAAGCC AAATATGATT GATTTGGTAA TCCTACATAA
ACATAGTACC TTAAAATCTG TAGATGCTGA AGTTTCTCGC ATTGTTAAAT GCAAAATAAT AATATCGATT CTTGAATTTT
CTTTTCTAGT TCAGGTTAGA AGTGATTTAT CCTACATAAA AACAGTAATT CTTAAAATCT TGAATTTTCT TGAATACCTG
GTCCTTTGTA CGTTAAAAGT GATTGAATTT TAAAATAGTT GATAATTTAG TTCTTAAAA

>Vigan.08G227900.01
ATGCTGGGCT TTTCATATGG AGAAATATTT CTGTTGCTTG GAGCCACTGC TGCTCTGATA GGTCCAAAGG ATTTACCAAT
CATATCCAGA ACAGCAGGGA GACTTGCTGG TAGAGCTATT GGATATGTAC AATTGGCTCG TGGTCAGTTT GAAAATGTTA
TGCAGCAATC CCAGGCTCGC CAGGTTCATA AGGAACTGCA AGACACAATG GCTCAGCTAG ATGCTATTCG TCATGAAATT
CGAAGCATAT CAATCATAAA TCCTGGCCCT TTGACACGAA GATTTGCTGA CAATCCTGAC CAGACATCTA TCCCAAATGA
CTGTAAGAAA CCAGAAGATT CTGGAGAGAA TCACCCGAAT CCCACTGTTA TCAAGGACTC AACTTCTGTG TCTTCTAATT
CATGCAATAT GCAAAATCAA GCAACCATTT ACGCCAGATT TGCAGAGTCC CCTTCCATAA AGAATGAGTT GTCAGCAATT
AGTCCTGAAG TGGTGAAGAT AGATGACAAA CTGCAGCTTA CTGTCTTACC CATATCCGCT GAAAATGCTG GACTATTACC
AAATCGTGGG GCTGATGTGA AAGGATCTGA CATAGTTCTA GAAGCAATTT TGGAGGCAGA GGTAGCTCAT AAAGCAAAGG
AATTTTTTTC GCAGCCCCAA AACCAAGCCA AATATGATTG A

>Vigan.08G227900.01
MLGFSYGEIF LLLGATAALI GPKDLPIISR TAGRLAGRAI GYVQLARGQF ENVMQQSQAR QVHKELQDTM AQLDAIRHEI
RSISIINPGP LTRRFADNPD QTSIPNDCKK PEDSGENHPN PTVIKDSTSV SSNSCNMQNQ ATIYARFAES PSIKNELSAI
SPEVVKIDDK LQLTVLPISA ENAGLLPNRG ADVKGSDIVL EAILEAEVAH KAKEFFSQPQ NQAKYD*