GBrowse Details

Vigan.08G228600.01

Basic Information:
Name: Vigan.08G228600.01
Multiple alignment
Variant Information
Position: Chr08:21239025..21241686 (+ strand)
Length: 2662
Functional Information:
Description: Similar to Auxin-induced protein. [V7BGN7, Phaseolus vulgaris]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.18,2.36,129.66,43.63,1.55,69.56,16.40,60.88
Automatic updates:
Name: NM_001254670 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-induced protein AUX28-like (LOC100803065), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317623 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max auxin-induced protein AUX28-like (LOC100780214), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21239025..21239243 (+ strand)
Length: 219
Type: five_prime_UTR
Position: Chr08:21239244..21239545 (+ strand)
Length: 302
Type: CDS
Position: Chr08:21239878..21240101 (+ strand)
Length: 224
Type: CDS
Position: Chr08:21240270..21240405 (+ strand)
Length: 136
Type: CDS
Position: Chr08:21240846..21240907 (+ strand)
Length: 62
Type: CDS
Position: Chr08:21241122..21241159 (+ strand)
Length: 38
Type: CDS
Position: Chr08:21241160..21241686 (+ strand)
Length: 527
Type: three_prime_UTR


>Vigan.08G228600.01
TGGCAGAAAC CCATTGCTCC ATGAAGTTGT TAAAATGACA AAGCACCCCA TCCCTTGTTG TATTAATGCC GACCTCACCC
AAACTGTTAA CGAATTAACG TGGCTGCCCC TATAATATAC CTCACCCCAC TACTGTTATT ATTATTGCAG AAAAGAGCGA
AATCCCTGAA TGCTTAGAGA GAGAAAGAGT GATAAAGTGG AAGAAGAAAA GAACAATCGA TGGAAGCTGG TCTCATGAAG
GAGAAGATGG TGTTTGAGGA AACTGAACTC AGGCTGGGAC TTGGACTTGG ACTACCTGGA AATGGAGGCA CAGCAACTGA
AGCAGCAGCA GCAGCAGCAG AAGGAGTGAG GAAGAGAGGC TTCTCTGAAA CTCAGACTGA AACAACCACC GTTGATTTGA
AGCTTAACCT CTCACCAAAG GAACTTTCTT CTGCTGATGG AACAGATCCA CGTAATAAGC CAAACACTTC GCCTAAGGAG
AAAACCCTTT TGCTTCCCGA TCCCGCCAAA CCTCCTGCTA AGGAGCAAGT TGTGGGATGG CCACCAGTGA GGTCATTCAG
GAAGAACATG TTTGCAGCAC AAAAGAACAT GGGAGAGGAA AGTGAGAAGA ACAGCCCTAA TGCAAGCTTT GTGAAAGTTA
GCATGGATGG AGCACCTTAT CTCCGGAAAG TGGACTTGAA GATGTACAAG AGTTACCCAG AACTCTCTGA TGCCTTGGGA
AAAATGTTTA GCTCCTTCAC CATTGGGAAT TGTGAATCCC AAGGCTTTAA GGATTTCATG AATGAGAGCA AGTTGATGGA
TCTTTTGAAC AGCTCCGACT GTGTCCCAAC CTATGAAGAC AGGGATGGTG ACTGGATGCT TGTCGGTGAT GTTCCATGGG
AGATGTTTGT TGAATCATGC AAGCGTTTAC GTATCATGAA AGGGAAGGAA GCCATTGGAC TGGCACCAAG AGCCATGGAG
AAATGCAAGA ACAGGAGCTA GAGCAGTAAT TACCGTAACC TGTTCCAGCA TCGTCAGTGG TGACAGTTGA CTTAGTAACT
GCAGACACAG ATGGAGAGAG CAGGATGTTA AAATATAGTT AAATTGTGCA TCATCATTAT TATTATTATT ATTATTATTA
TTATTATTAT GGTTTGTTAT ATATAATATT ATTTCAAACA AAGCAGTGAG ATGTCTAATG TCTAAGTATA AATTATGAAC
AGAAACGATA ATCACTCTAA ATTATGTTCC AAGACCTTCT TGTTTCTTTA ATCGTTGTGT GGTTGCGTAA TAAGTTGTTT
GTCCGTTGTA GTTATATATT TTTCATTTCC TACTTTTCAA CTTGTCCTTT TTCCTTCTCC ACCATCATTG ATTCCTTGTA
TTCATCAAAT TTTTTATTTG TATAATATTA AATTGTATTG CATGGATGTT AGTTTTTGTT TTAGGTCTAG AATGGAGTAG
CTGGTACTTG AAATGTTCCC AAACATGATA GATTGGAAGA CAAGATCATG TGCACGCACA AAGAGCAT

>Vigan.08G228600.01
ATGGAAGCTG GTCTCATGAA GGAGAAGATG GTGTTTGAGG AAACTGAACT CAGGCTGGGA CTTGGACTTG GACTACCTGG
AAATGGAGGC ACAGCAACTG AAGCAGCAGC AGCAGCAGCA GAAGGAGTGA GGAAGAGAGG CTTCTCTGAA ACTCAGACTG
AAACAACCAC CGTTGATTTG AAGCTTAACC TCTCACCAAA GGAACTTTCT TCTGCTGATG GAACAGATCC ACGTAATAAG
CCAAACACTT CGCCTAAGGA GAAAACCCTT TTGCTTCCCG ATCCCGCCAA ACCTCCTGCT AAGGAGCAAG TTGTGGGATG
GCCACCAGTG AGGTCATTCA GGAAGAACAT GTTTGCAGCA CAAAAGAACA TGGGAGAGGA AAGTGAGAAG AACAGCCCTA
ATGCAAGCTT TGTGAAAGTT AGCATGGATG GAGCACCTTA TCTCCGGAAA GTGGACTTGA AGATGTACAA GAGTTACCCA
GAACTCTCTG ATGCCTTGGG AAAAATGTTT AGCTCCTTCA CCATTGGGAA TTGTGAATCC CAAGGCTTTA AGGATTTCAT
GAATGAGAGC AAGTTGATGG ATCTTTTGAA CAGCTCCGAC TGTGTCCCAA CCTATGAAGA CAGGGATGGT GACTGGATGC
TTGTCGGTGA TGTTCCATGG GAGATGTTTG TTGAATCATG CAAGCGTTTA CGTATCATGA AAGGGAAGGA AGCCATTGGA
CTGGCACCAA GAGCCATGGA GAAATGCAAG AACAGGAGCT AG

>Vigan.08G228600.01
MEAGLMKEKM VFEETELRLG LGLGLPGNGG TATEAAAAAA EGVRKRGFSE TQTETTTVDL KLNLSPKELS SADGTDPRNK
PNTSPKEKTL LLPDPAKPPA KEQVVGWPPV RSFRKNMFAA QKNMGEESEK NSPNASFVKV SMDGAPYLRK VDLKMYKSYP
ELSDALGKMF SSFTIGNCES QGFKDFMNES KLMDLLNSSD CVPTYEDRDG DWMLVGDVPW EMFVESCKRL RIMKGKEAIG
LAPRAMEKCK NRS*