GBrowse Details

Vigan.08G231600.01

Basic Information:
Name: Vigan.08G231600.01
Multiple alignment
Variant Information
Position: Chr08:21629375..21633656 (- strand)
Length: 4282
Functional Information:
Description: Similar to Uncharacterized protein. [K7LH38, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.64,0.39,4.49,9.85,29.89,1.96,1.63,10.41
Arabidopsis thaliana homolog: AT4G02670.1
Automatic updates:
Name: PQ761028 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypothetical protein (Glyma.02G144400) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21629375..21629849 (- strand)
Length: 475
Type: three_prime_UTR
Position: Chr08:21629850..21630642 (- strand)
Length: 793
Type: CDS
Position: Chr08:21632147..21632543 (- strand)
Length: 397
Type: CDS
Position: Chr08:21632717..21632876 (- strand)
Length: 160
Type: CDS
Position: Chr08:21632877..21633656 (- strand)
Length: 780
Type: five_prime_UTR

>Vigan.08G231600.01 class=Sequence position=Chr08:21629375..21633656 (- strand)
AGGATACTTC CTAGTCTTTG CCCGGTCAAT TCCGTCATCC ACATCCCTCT TTTTCTCTCT GCAGACTTCT TAACCTTTTT
TAGTCCTCTT GCCTTTTCCT TCACCCTAAT TTCTTTCTTT GCTCAGTTTT TTCTTAATGT GTTTTACAAT TTGCCACTAC
TTCTGTTGTC ATCATCACCT TCTCCTCTCT ACAAATATGA ACTTCTCTTA GCATAATATA GATATATTAA GAAAAACGAA
GTCAGGTTAT TGATTATATC TTCCTTTTTT CAATATGGTT GTTGATTGCA TATATAGAGG ATTGTAGTGA TGAGCATGTT
TAATTTTACA TATGGAAAGA GATATACATA TATATCTAAA GTAGTTGTTC AGAGTTAGTT CAGACAAAGA ATCCACATAG
CTTAGACAGT GACTTGAAAA ATAACCCACC ACCATCATCA TCATCATCAC CTCCTCTCTT CACGAGATTA ATTACTCATT
TTACCTTTTT CTTTTTATTG TAATGTTTTA CCACAAAGTA AATGATGTCT TTCTCTGTCT ATGAGTCCCT GCCACCCCTT
CACTAGCAAG GTTCTGCATA TAATTATTAG TCGTGTCCCA ACCCAAGCTA GGATTTTGCA TTTTGGCTCA ACAAGGAGCA
AAAAGTAGTC ATCACGAAAC CAAGGTAATA AATACATAGC TACGGTTTGG AACAAACAAA CAAACCAAGA CATTAGAATA
TCGTATCTTG CTTTTCTTCT CTTTCTTTTT CCTCCAACTT GGAGTTTTTC TTCAAAGGCA ATGTTCCCTT CAGTTATGTC
CAATTCCAAT TCCTTGTCTG AAGAGGCCAC TGTCTCCTGT GGTACAAGAA TCGGTGGACT CAATCACGTA GTCACAACAA
TCATTTCTCC ACAACAACCT CAAAAGATCA AGAAAAAGAG AAACCTCCCT GGAAACCCTG GTAATATTAA CTAATTTATC
ATTATATGTA TATAAGCTCT TTGGAGTTTG GATTATATGC ATACGCATCA TACATATATC CTTGCTATTG ATGAGATGTG
AATTATTATT ATCAGATGAC ATGTGTGCTG GTTAATTAGG TTCGTTTTCT GATTTAAACT GTGCACGTTT CAGACCCGGA
TGCTGAAGTG ATTGCTTTAT CACCGAAGAC TCTTCTAGCT ACTAATAGAT TTGTGTGTGA GATCTGCAAC AAGGGTTTCC
AGAGAGACCA GAACCTTCAG CTTCATAGGA GAGGGCATAA CCTCCCATGG AAGCTGAAGC AAAGGAACAA CAAAGAGGTG
AAAAAGAAAG CCTACGTTTG CCCGGAACCT TCATGCGTTC ATCACAACCC CTCAAGGGCT CTCGGGGACC TCACAGGAAT
TAAGAAACAT TACTGCAGAA AACATGGAGA GAAGAAGTGG AAATGTGAAA AGTGCTCAAA GATCTATGCC GTTCAGTCTG
ATTGGAAAGC TCACTCCAAA ACCTGTGGTA CTAGAGAATA TAGATGTGAT TGTGGAACCC TTTTTTCCAG GTATATATAT
GTATACTCAA CTTCTATTTA TTTAGAAATT TTGAAGTGTG TTCATATGTT AGATTTAAAT CAATTCATGT TTAACTATCA
AAAGGGGTTC TCTTAAAAAT TTTTGGATGA TCTTTGCTCT TTATGGTAAT GGAACTAAGC TTGATTTCAC CCTTGTTTTA
ATTGCTCAAG TTCCGTGGTA GGTTGCATGA AAGTGGACAC AGCTAAAATA CAAGTGTCAA TTTGCAAGAG TGACTGAAAC
TTTACCTGTT TCTGAATCCT AAAACTGCCA AATGAATGCG CGGCAATTAA CAACAAAAAC AAAATCACAA TCCATACATA
CATCTTTTGT TTTTATCTAC TGTTTTATCT GTGACTCAAT AGCATTTTTT TTAACTCATG ATAATACATT CACATGCATG
TCAGCATGAA GGGCATGATA TGTACTATGT TTACATTATG TCAAAAAAAA GAGTGTTCAA TTCATAGGGT TTAAGGCTAC
GAAAAAATTT CAAGGGTGTC AGAGAGTGAT CAATTGTTTT CTAGACTTCT ATTCTCTCTC TCATAACATA TATGCACAAA
TGTGCGTATA TAGAGTGGAT GCAGTCTCTA AGAAAATGAT GGGATCTATT TTTGTCTACT GAAAAAGTAA AAGAAGTATA
ATTAACATTG TTCAAAAATT TGTGATGATT TCTTACTTTT TCTTAAATTT TTTTAGTATA GCCATTTTTC TCTGAACTTT
CATCATTGTG AAACCTGATA AATCTGCAAA AAAATCTGAT ATGCTAAGTT GCTTTCCTCT AGCATCATCA GTGCATATAT
GGGATTCATT TACATTTCTC ACCACTAAGT GTCGTGCATG AGCTCTAGTT TCCCAAGACT TCCGCCATCA TCACGAAATG
CCGATTATTC TTTTACATTG AATCTGTATA TCAAATTTTG GACCAACTTT AGATATTTTC CAACTAAAAT CTATATTTAC
CAAAATAAGA TTTTCCAATA TTTTTTTGTT ATGTCCATGC ATGAAGCACA TGAGCATTCA TCAATTTTCC ACATTCATTT
TGTTCTCTCT CCTACTTTAA ATTTGACCCG GAGACACTAT TCATGTCCCA TTAGGTCTAA GCCTTTTACA CTTCAATCCG
TGTATGGATT ACTCTCTCCC ATGCATAATT TTCCCCACCT TTTTTGAAAC GGGGCACATT CTACAAGGAT ATGTAATAAG
TCCTTCTTTC GGTTTTGCAA AAACTGCACA TTCGCATGCA TGATTCACTT CATTCGTTAA CACACCCCCA AAAGAAAAAG
GAAAAAAAAA ATCCCTTGCT CCTATAATAC TAAAGGTTAT TAGTTTCTTA AAATGATATA TCTAAAATGT GAAAAGAGAA
GATTTTTACA TCCAATAGTT CAGACATAAT TGATACATGT TTTTATTATA TAGTGTGATA TGGATGAAGG AATATCTGTA
GGGTTGTTTT GTGCAGTGAA AGTAAAATTT GTATTATTTG TGTGAAAACT GCAGGAAGGA CAGCTTCATA ACTCACAGAG
CATTCTGTGA TGCATTGGCT GAAGAAAGTG CAAGACTGTC AGCAAACCAA CTGGCCACAA GCACCACAAA CCCTTTGGTC
CAATCCCTAT TCCTTTTCCC AACCCAACAA CACAACAACA ACAACATCAA CACCACCAAC TTCATCAATC CCTGGGACCC
AAACCCTAAC CCTAGCAACC TTCCAACCCT CCACAACGCC ATCAAATCTG AATCTCACAA CTTCCACACT CCAATCTTCA
GCACCACCAC CAACAACAAC AACATCTCTT CTCCTTCATT GCTTCTTCAT CATCCCCCCA AGACCATGAT AACCTCACCC
TACAGTGACC TCCACGTACG CCCCTCCAAC GCTGCCACGT CAGCGCACCT CTCCGCCACT GCGCTGCTCC AGAAGGCTGC
AACCTTTGGC GCCGCCGCTA TAACGGGCCC CACTCACGTC ACTCCGCTCA GCATGGCCGA GTTGGGAACC GGATCGACTC
AGCTGGACTC GGTGCCACCC GAACGCTACA TGAACATGAG GGGCCTCACG AATAGCGACG GTCTGACCAG GGACTTTCTT
GGCCTCACCA ATGGCGACGC GGTGAACGTT AGCATCGACG TCAAGGACAT GCTAACGTTC ACGGGAGGGA GCGTAGAGTA
CAACCATTAC CACCACCAAG CCTACGATCA CCATCATAAT CATAGCAACT CGCTTTTCAA GCCACAGCAT GGGTTTGGAT
TCCTTGGGAC AACCACTGGA CCCGAATCCT GGGGAAATTG TGAGTGAACT GCTTTAGTCT GTGAAAATTG TAAGCTTCGG
TCACAAAATT TCGAAAAATG TTTACTACAA TCCTTAATTT TACAAGAGTT AACGTTAACA ACACACTCCT AGCATTCTCT
TTTAATACAC TCGTTTTTAT AGATTAAAAT TTATTGAAAA CCACTTTTAT TAATAAAAGT TTGTGAAGGG GTGTGCTGCT
AACAGTGACC GTTTGTACTG AATGACCTTG TTTAAAATCA AGGACTGAAG TAAAAATCTT GAATCAAAGT TACTGAAGAG
ATTGTTGCTT ACAATTTTAG GGACCAATGT GTTGTGTTGG GTGTAATTTC GAGATAATGT TCACACAAAC TAGAGAGTGG
AATACCCTTG CTTGCTGGAA CTTGTATTTT TATTTTACCC CTTTGAATTA CTACAGTTAA TGCTTTGCCT CAGAGTTTGG
TTGATGAATT AATTATTAAA AGGTGTTTTA GTTTTGTCCT GA

>Vigan.08G231600.01
AGGATACTTC CTAGTCTTTG CCCGGTCAAT TCCGTCATCC ACATCCCTCT TTTTCTCTCT GCAGACTTCT TAACCTTTTT
TAGTCCTCTT GCCTTTTCCT TCACCCTAAT TTCTTTCTTT GCTCAGTTTT TTCTTAATGT GTTTTACAAT TTGCCACTAC
TTCTGTTGTC ATCATCACCT TCTCCTCTCT ACAAATATGA ACTTCTCTTA GCATAATATA GATATATTAA GAAAAACGAA
GTCAGGTTAT TGATTATATC TTCCTTTTTT CAATATGGTT GTTGATTGCA TATATAGAGG ATTGTAGTGA TGAGCATGTT
TAATTTTACA TATGGAAAGA GATATACATA TATATCTAAA GTAGTTGTTC AGAGTTAGTT CAGACAAAGA ATCCACATAG
CTTAGACAGT GACTTGAAAA ATAACCCACC ACCATCATCA TCATCATCAC CTCCTCTCTT CACGAGATTA ATTACTCATT
TTACCTTTTT CTTTTTATTG TAATGTTTTA CCACAAAGTA AATGATGTCT TTCTCTGTCT ATGAGTCCCT GCCACCCCTT
CACTAGCAAG GTTCTGCATA TAATTATTAG TCGTGTCCCA ACCCAAGCTA GGATTTTGCA TTTTGGCTCA ACAAGGAGCA
AAAAGTAGTC ATCACGAAAC CAAGGTAATA AATACATAGC TACGGTTTGG AACAAACAAA CAAACCAAGA CATTAGAATA
TCGTATCTTG CTTTTCTTCT CTTTCTTTTT CCTCCAACTT GGAGTTTTTC TTCAAAGGCA ATGTTCCCTT CAGTTATGTC
CAATTCCAAT TCCTTGTCTG AAGAGGCCAC TGTCTCCTGT GGTACAAGAA TCGGTGGACT CAATCACGTA GTCACAACAA
TCATTTCTCC ACAACAACCT CAAAAGATCA AGAAAAAGAG AAACCTCCCT GGAAACCCTG ACCCGGATGC TGAAGTGATT
GCTTTATCAC CGAAGACTCT TCTAGCTACT AATAGATTTG TGTGTGAGAT CTGCAACAAG GGTTTCCAGA GAGACCAGAA
CCTTCAGCTT CATAGGAGAG GGCATAACCT CCCATGGAAG CTGAAGCAAA GGAACAACAA AGAGGTGAAA AAGAAAGCCT
ACGTTTGCCC GGAACCTTCA TGCGTTCATC ACAACCCCTC AAGGGCTCTC GGGGACCTCA CAGGAATTAA GAAACATTAC
TGCAGAAAAC ATGGAGAGAA GAAGTGGAAA TGTGAAAAGT GCTCAAAGAT CTATGCCGTT CAGTCTGATT GGAAAGCTCA
CTCCAAAACC TGTGGTACTA GAGAATATAG ATGTGATTGT GGAACCCTTT TTTCCAGGAA GGACAGCTTC ATAACTCACA
GAGCATTCTG TGATGCATTG GCTGAAGAAA GTGCAAGACT GTCAGCAAAC CAACTGGCCA CAAGCACCAC AAACCCTTTG
GTCCAATCCC TATTCCTTTT CCCAACCCAA CAACACAACA ACAACAACAT CAACACCACC AACTTCATCA ATCCCTGGGA
CCCAAACCCT AACCCTAGCA ACCTTCCAAC CCTCCACAAC GCCATCAAAT CTGAATCTCA CAACTTCCAC ACTCCAATCT
TCAGCACCAC CACCAACAAC AACAACATCT CTTCTCCTTC ATTGCTTCTT CATCATCCCC CCAAGACCAT GATAACCTCA
CCCTACAGTG ACCTCCACGT ACGCCCCTCC AACGCTGCCA CGTCAGCGCA CCTCTCCGCC ACTGCGCTGC TCCAGAAGGC
TGCAACCTTT GGCGCCGCCG CTATAACGGG CCCCACTCAC GTCACTCCGC TCAGCATGGC CGAGTTGGGA ACCGGATCGA
CTCAGCTGGA CTCGGTGCCA CCCGAACGCT ACATGAACAT GAGGGGCCTC ACGAATAGCG ACGGTCTGAC CAGGGACTTT
CTTGGCCTCA CCAATGGCGA CGCGGTGAAC GTTAGCATCG ACGTCAAGGA CATGCTAACG TTCACGGGAG GGAGCGTAGA
GTACAACCAT TACCACCACC AAGCCTACGA TCACCATCAT AATCATAGCA ACTCGCTTTT CAAGCCACAG CATGGGTTTG
GATTCCTTGG GACAACCACT GGACCCGAAT CCTGGGGAAA TTGTGAGTGA ACTGCTTTAG TCTGTGAAAA TTGTAAGCTT
CGGTCACAAA ATTTCGAAAA ATGTTTACTA CAATCCTTAA TTTTACAAGA GTTAACGTTA ACAACACACT CCTAGCATTC
TCTTTTAATA CACTCGTTTT TATAGATTAA AATTTATTGA AAACCACTTT TATTAATAAA AGTTTGTGAA GGGGTGTGCT
GCTAACAGTG ACCGTTTGTA CTGAATGACC TTGTTTAAAA TCAAGGACTG AAGTAAAAAT CTTGAATCAA AGTTACTGAA
GAGATTGTTG CTTACAATTT TAGGGACCAA TGTGTTGTGT TGGGTGTAAT TTCGAGATAA TGTTCACACA AACTAGAGAG
TGGAATACCC TTGCTTGCTG GAACTTGTAT TTTTATTTTA CCCCTTTGAA TTACTACAGT TAATGCTTTG CCTCAGAGTT
TGGTTGATGA ATTAATTATT AAAAGGTGTT TTAGTTTTGT CCTGA

>Vigan.08G231600.01
ATGTTCCCTT CAGTTATGTC CAATTCCAAT TCCTTGTCTG AAGAGGCCAC TGTCTCCTGT GGTACAAGAA TCGGTGGACT
CAATCACGTA GTCACAACAA TCATTTCTCC ACAACAACCT CAAAAGATCA AGAAAAAGAG AAACCTCCCT GGAAACCCTG
ACCCGGATGC TGAAGTGATT GCTTTATCAC CGAAGACTCT TCTAGCTACT AATAGATTTG TGTGTGAGAT CTGCAACAAG
GGTTTCCAGA GAGACCAGAA CCTTCAGCTT CATAGGAGAG GGCATAACCT CCCATGGAAG CTGAAGCAAA GGAACAACAA
AGAGGTGAAA AAGAAAGCCT ACGTTTGCCC GGAACCTTCA TGCGTTCATC ACAACCCCTC AAGGGCTCTC GGGGACCTCA
CAGGAATTAA GAAACATTAC TGCAGAAAAC ATGGAGAGAA GAAGTGGAAA TGTGAAAAGT GCTCAAAGAT CTATGCCGTT
CAGTCTGATT GGAAAGCTCA CTCCAAAACC TGTGGTACTA GAGAATATAG ATGTGATTGT GGAACCCTTT TTTCCAGGAA
GGACAGCTTC ATAACTCACA GAGCATTCTG TGATGCATTG GCTGAAGAAA GTGCAAGACT GTCAGCAAAC CAACTGGCCA
CAAGCACCAC AAACCCTTTG GTCCAATCCC TATTCCTTTT CCCAACCCAA CAACACAACA ACAACAACAT CAACACCACC
AACTTCATCA ATCCCTGGGA CCCAAACCCT AACCCTAGCA ACCTTCCAAC CCTCCACAAC GCCATCAAAT CTGAATCTCA
CAACTTCCAC ACTCCAATCT TCAGCACCAC CACCAACAAC AACAACATCT CTTCTCCTTC ATTGCTTCTT CATCATCCCC
CCAAGACCAT GATAACCTCA CCCTACAGTG ACCTCCACGT ACGCCCCTCC AACGCTGCCA CGTCAGCGCA CCTCTCCGCC
ACTGCGCTGC TCCAGAAGGC TGCAACCTTT GGCGCCGCCG CTATAACGGG CCCCACTCAC GTCACTCCGC TCAGCATGGC
CGAGTTGGGA ACCGGATCGA CTCAGCTGGA CTCGGTGCCA CCCGAACGCT ACATGAACAT GAGGGGCCTC ACGAATAGCG
ACGGTCTGAC CAGGGACTTT CTTGGCCTCA CCAATGGCGA CGCGGTGAAC GTTAGCATCG ACGTCAAGGA CATGCTAACG
TTCACGGGAG GGAGCGTAGA GTACAACCAT TACCACCACC AAGCCTACGA TCACCATCAT AATCATAGCA ACTCGCTTTT
CAAGCCACAG CATGGGTTTG GATTCCTTGG GACAACCACT GGACCCGAAT CCTGGGGAAA TTGTGAGTGA 

>Vigan.08G231600.01
MFPSVMSNSN SLSEEATVSC GTRIGGLNHV VTTIISPQQP QKIKKKRNLP GNPDPDAEVI ALSPKTLLAT NRFVCEICNK
GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK KKAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV
QSDWKAHSKT CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATSTTNPL VQSLFLFPTQ QHNNNNINTT
NFINPWDPNP NPSNLPTLHN AIKSESHNFH TPIFSTTTNN NNISSPSLLL HHPPKTMITS PYSDLHVRPS NAATSAHLSA
TALLQKAATF GAAAITGPTH VTPLSMAELG TGSTQLDSVP PERYMNMRGL TNSDGLTRDF LGLTNGDAVN VSIDVKDMLT
FTGGSVEYNH YHHQAYDHHH NHSNSLFKPQ HGFGFLGTTT GPESWGNCE*