GBrowse Details

Vigan.08G231600.01

Basic Information:
Name: Vigan.08G231600.01
Multiple alignment
Variant Information
Position: Chr08:21629375..21633656 (- strand)
Length: 4282
Functional Information:
Description: Similar to Uncharacterized protein. [K7LH38, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Zinc finger, C2H2 (IPR007087)
Zinc finger C2H2-type/integrase DNA-binding domain (IPR013087)
Zinc finger, C2H2-like (IPR015880)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.64,0.39,4.49,9.85,29.89,1.96,1.63,10.41
Arabidopsis thaliana homolog: AT4G02670.1
Automatic updates:
Name: PQ761028 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hypothetical protein (Glyma.02G144400) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21629375..21629849 (- strand)
Length: 475
Type: three_prime_UTR
Position: Chr08:21629850..21630642 (- strand)
Length: 793
Type: CDS
Position: Chr08:21632147..21632543 (- strand)
Length: 397
Type: CDS
Position: Chr08:21632717..21632876 (- strand)
Length: 160
Type: CDS
Position: Chr08:21632877..21633656 (- strand)
Length: 780
Type: five_prime_UTR


>Vigan.08G231600.01
AGGATACTTC CTAGTCTTTG CCCGGTCAAT TCCGTCATCC ACATCCCTCT TTTTCTCTCT GCAGACTTCT TAACCTTTTT
TAGTCCTCTT GCCTTTTCCT TCACCCTAAT TTCTTTCTTT GCTCAGTTTT TTCTTAATGT GTTTTACAAT TTGCCACTAC
TTCTGTTGTC ATCATCACCT TCTCCTCTCT ACAAATATGA ACTTCTCTTA GCATAATATA GATATATTAA GAAAAACGAA
GTCAGGTTAT TGATTATATC TTCCTTTTTT CAATATGGTT GTTGATTGCA TATATAGAGG ATTGTAGTGA TGAGCATGTT
TAATTTTACA TATGGAAAGA GATATACATA TATATCTAAA GTAGTTGTTC AGAGTTAGTT CAGACAAAGA ATCCACATAG
CTTAGACAGT GACTTGAAAA ATAACCCACC ACCATCATCA TCATCATCAC CTCCTCTCTT CACGAGATTA ATTACTCATT
TTACCTTTTT CTTTTTATTG TAATGTTTTA CCACAAAGTA AATGATGTCT TTCTCTGTCT ATGAGTCCCT GCCACCCCTT
CACTAGCAAG GTTCTGCATA TAATTATTAG TCGTGTCCCA ACCCAAGCTA GGATTTTGCA TTTTGGCTCA ACAAGGAGCA
AAAAGTAGTC ATCACGAAAC CAAGGTAATA AATACATAGC TACGGTTTGG AACAAACAAA CAAACCAAGA CATTAGAATA
TCGTATCTTG CTTTTCTTCT CTTTCTTTTT CCTCCAACTT GGAGTTTTTC TTCAAAGGCA ATGTTCCCTT CAGTTATGTC
CAATTCCAAT TCCTTGTCTG AAGAGGCCAC TGTCTCCTGT GGTACAAGAA TCGGTGGACT CAATCACGTA GTCACAACAA
TCATTTCTCC ACAACAACCT CAAAAGATCA AGAAAAAGAG AAACCTCCCT GGAAACCCTG ACCCGGATGC TGAAGTGATT
GCTTTATCAC CGAAGACTCT TCTAGCTACT AATAGATTTG TGTGTGAGAT CTGCAACAAG GGTTTCCAGA GAGACCAGAA
CCTTCAGCTT CATAGGAGAG GGCATAACCT CCCATGGAAG CTGAAGCAAA GGAACAACAA AGAGGTGAAA AAGAAAGCCT
ACGTTTGCCC GGAACCTTCA TGCGTTCATC ACAACCCCTC AAGGGCTCTC GGGGACCTCA CAGGAATTAA GAAACATTAC
TGCAGAAAAC ATGGAGAGAA GAAGTGGAAA TGTGAAAAGT GCTCAAAGAT CTATGCCGTT CAGTCTGATT GGAAAGCTCA
CTCCAAAACC TGTGGTACTA GAGAATATAG ATGTGATTGT GGAACCCTTT TTTCCAGGAA GGACAGCTTC ATAACTCACA
GAGCATTCTG TGATGCATTG GCTGAAGAAA GTGCAAGACT GTCAGCAAAC CAACTGGCCA CAAGCACCAC AAACCCTTTG
GTCCAATCCC TATTCCTTTT CCCAACCCAA CAACACAACA ACAACAACAT CAACACCACC AACTTCATCA ATCCCTGGGA
CCCAAACCCT AACCCTAGCA ACCTTCCAAC CCTCCACAAC GCCATCAAAT CTGAATCTCA CAACTTCCAC ACTCCAATCT
TCAGCACCAC CACCAACAAC AACAACATCT CTTCTCCTTC ATTGCTTCTT CATCATCCCC CCAAGACCAT GATAACCTCA
CCCTACAGTG ACCTCCACGT ACGCCCCTCC AACGCTGCCA CGTCAGCGCA CCTCTCCGCC ACTGCGCTGC TCCAGAAGGC
TGCAACCTTT GGCGCCGCCG CTATAACGGG CCCCACTCAC GTCACTCCGC TCAGCATGGC CGAGTTGGGA ACCGGATCGA
CTCAGCTGGA CTCGGTGCCA CCCGAACGCT ACATGAACAT GAGGGGCCTC ACGAATAGCG ACGGTCTGAC CAGGGACTTT
CTTGGCCTCA CCAATGGCGA CGCGGTGAAC GTTAGCATCG ACGTCAAGGA CATGCTAACG TTCACGGGAG GGAGCGTAGA
GTACAACCAT TACCACCACC AAGCCTACGA TCACCATCAT AATCATAGCA ACTCGCTTTT CAAGCCACAG CATGGGTTTG
GATTCCTTGG GACAACCACT GGACCCGAAT CCTGGGGAAA TTGTGAGTGA ACTGCTTTAG TCTGTGAAAA TTGTAAGCTT
CGGTCACAAA ATTTCGAAAA ATGTTTACTA CAATCCTTAA TTTTACAAGA GTTAACGTTA ACAACACACT CCTAGCATTC
TCTTTTAATA CACTCGTTTT TATAGATTAA AATTTATTGA AAACCACTTT TATTAATAAA AGTTTGTGAA GGGGTGTGCT
GCTAACAGTG ACCGTTTGTA CTGAATGACC TTGTTTAAAA TCAAGGACTG AAGTAAAAAT CTTGAATCAA AGTTACTGAA
GAGATTGTTG CTTACAATTT TAGGGACCAA TGTGTTGTGT TGGGTGTAAT TTCGAGATAA TGTTCACACA AACTAGAGAG
TGGAATACCC TTGCTTGCTG GAACTTGTAT TTTTATTTTA CCCCTTTGAA TTACTACAGT TAATGCTTTG CCTCAGAGTT
TGGTTGATGA ATTAATTATT AAAAGGTGTT TTAGTTTTGT CCTGA

>Vigan.08G231600.01
ATGTTCCCTT CAGTTATGTC CAATTCCAAT TCCTTGTCTG AAGAGGCCAC TGTCTCCTGT GGTACAAGAA TCGGTGGACT
CAATCACGTA GTCACAACAA TCATTTCTCC ACAACAACCT CAAAAGATCA AGAAAAAGAG AAACCTCCCT GGAAACCCTG
ACCCGGATGC TGAAGTGATT GCTTTATCAC CGAAGACTCT TCTAGCTACT AATAGATTTG TGTGTGAGAT CTGCAACAAG
GGTTTCCAGA GAGACCAGAA CCTTCAGCTT CATAGGAGAG GGCATAACCT CCCATGGAAG CTGAAGCAAA GGAACAACAA
AGAGGTGAAA AAGAAAGCCT ACGTTTGCCC GGAACCTTCA TGCGTTCATC ACAACCCCTC AAGGGCTCTC GGGGACCTCA
CAGGAATTAA GAAACATTAC TGCAGAAAAC ATGGAGAGAA GAAGTGGAAA TGTGAAAAGT GCTCAAAGAT CTATGCCGTT
CAGTCTGATT GGAAAGCTCA CTCCAAAACC TGTGGTACTA GAGAATATAG ATGTGATTGT GGAACCCTTT TTTCCAGGAA
GGACAGCTTC ATAACTCACA GAGCATTCTG TGATGCATTG GCTGAAGAAA GTGCAAGACT GTCAGCAAAC CAACTGGCCA
CAAGCACCAC AAACCCTTTG GTCCAATCCC TATTCCTTTT CCCAACCCAA CAACACAACA ACAACAACAT CAACACCACC
AACTTCATCA ATCCCTGGGA CCCAAACCCT AACCCTAGCA ACCTTCCAAC CCTCCACAAC GCCATCAAAT CTGAATCTCA
CAACTTCCAC ACTCCAATCT TCAGCACCAC CACCAACAAC AACAACATCT CTTCTCCTTC ATTGCTTCTT CATCATCCCC
CCAAGACCAT GATAACCTCA CCCTACAGTG ACCTCCACGT ACGCCCCTCC AACGCTGCCA CGTCAGCGCA CCTCTCCGCC
ACTGCGCTGC TCCAGAAGGC TGCAACCTTT GGCGCCGCCG CTATAACGGG CCCCACTCAC GTCACTCCGC TCAGCATGGC
CGAGTTGGGA ACCGGATCGA CTCAGCTGGA CTCGGTGCCA CCCGAACGCT ACATGAACAT GAGGGGCCTC ACGAATAGCG
ACGGTCTGAC CAGGGACTTT CTTGGCCTCA CCAATGGCGA CGCGGTGAAC GTTAGCATCG ACGTCAAGGA CATGCTAACG
TTCACGGGAG GGAGCGTAGA GTACAACCAT TACCACCACC AAGCCTACGA TCACCATCAT AATCATAGCA ACTCGCTTTT
CAAGCCACAG CATGGGTTTG GATTCCTTGG GACAACCACT GGACCCGAAT CCTGGGGAAA TTGTGAGTGA 

>Vigan.08G231600.01
MFPSVMSNSN SLSEEATVSC GTRIGGLNHV VTTIISPQQP QKIKKKRNLP GNPDPDAEVI ALSPKTLLAT NRFVCEICNK
GFQRDQNLQL HRRGHNLPWK LKQRNNKEVK KKAYVCPEPS CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV
QSDWKAHSKT CGTREYRCDC GTLFSRKDSF ITHRAFCDAL AEESARLSAN QLATSTTNPL VQSLFLFPTQ QHNNNNINTT
NFINPWDPNP NPSNLPTLHN AIKSESHNFH TPIFSTTTNN NNISSPSLLL HHPPKTMITS PYSDLHVRPS NAATSAHLSA
TALLQKAATF GAAAITGPTH VTPLSMAELG TGSTQLDSVP PERYMNMRGL TNSDGLTRDF LGLTNGDAVN VSIDVKDMLT
FTGGSVEYNH YHHQAYDHHH NHSNSLFKPQ HGFGFLGTTT GPESWGNCE*