GBrowse Details

Vigan.08G233300.01

Basic Information:
Name: Vigan.08G233300.01
Multiple alignment
Variant Information
Position: Chr08:21887663..21898446 (+ strand)
Length: 10784
Functional Information:
Description: Similar to Uncharacterized protein. [I1L865, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: biotin carboxylase activity (GO:0004075)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: ligase activity (GO:0016874)
Molecular Function: metal ion binding (GO:0046872)
InterPro: Biotin/lipoyl attachment (IPR000089)
Biotin-binding site (IPR001882)
Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain (IPR005479)
Carbamoyl-phosphate synthase, large subunit, N-terminal (IPR005481)
Biotin carboxylase, C-terminal (IPR005482)
Single hybrid motif (IPR011053)
Rudiment single hybrid motif (IPR011054)
ATP-grasp fold (IPR011761)
Biotin carboxylation domain (IPR011764)
ATP-grasp fold, subdomain 1 (IPR013815)
ATP-grasp fold, subdomain 2 (IPR013816)
Pre-ATP-grasp domain (IPR016185)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:375.41,76.89,22.00,23.16,3.91,9.08,4.81,9.87
Arabidopsis thaliana homolog: AT1G03090.2
Automatic updates:
Name: NM_001360310 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 3-methylcrotonyl-CoA carboxylase 1 (MCCA), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 8016064 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:21887663..21887810 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr08:21887811..21888146 (+ strand)
Length: 336
Type: CDS
Position: Chr08:21888228..21888349 (+ strand)
Length: 122
Type: CDS
Position: Chr08:21888456..21888603 (+ strand)
Length: 148
Type: CDS
Position: Chr08:21889096..21889233 (+ strand)
Length: 138
Type: CDS
Position: Chr08:21889472..21889567 (+ strand)
Length: 96
Type: CDS
Position: Chr08:21889654..21889713 (+ strand)
Length: 60
Type: CDS
Position: Chr08:21894288..21894380 (+ strand)
Length: 93
Type: CDS
Position: Chr08:21894462..21894573 (+ strand)
Length: 112
Type: CDS
Position: Chr08:21895418..21895519 (+ strand)
Length: 102
Type: CDS
Position: Chr08:21895664..21895800 (+ strand)
Length: 137
Type: CDS
Position: Chr08:21896233..21896467 (+ strand)
Length: 235
Type: CDS
Position: Chr08:21896547..21896713 (+ strand)
Length: 167
Type: CDS
Position: Chr08:21896794..21896910 (+ strand)
Length: 117
Type: CDS
Position: Chr08:21897051..21897293 (+ strand)
Length: 243
Type: CDS
Position: Chr08:21897401..21897496 (+ strand)
Length: 96
Type: CDS
Position: Chr08:21897950..21897958 (+ strand)
Length: 9
Type: CDS
Position: Chr08:21897959..21898446 (+ strand)
Length: 488
Type: three_prime_UTR


>Vigan.08G233300.01
CCTCGTCCCA CTCCATTACA GCGCAACACA CTTATCTGTT CGGAACTTCA ATTTGGACAA AAATACCCTC ACCAGTGTTC
GATCATGGCA CACATTCGTA TTATAACTAC CCACTCTCTA CATTCGCCAC ACCTACGGAC CAACCACCAT GGCTTCTCTG
GCATTAATCC GCAGAAAGAT TATAATCACC CGCACCACGC TCTCCCACTG GCACGTGTGC GCACGAGCAT TCTCCAACGC
TGACAGCAAC AACAATCGCA TCGAGAAGAT TCTAGTAGCT AACCGCGGCG AAATAGCTTG CAGGATCATG CGCACCGCAC
GGAGGCTTGG CATTCAAACC GTCGCCGTGT ATAGCGACGC CGATAGGGAC TCGCTACACG TGGCCTCCGC CGACGAGGCC
ATCCGAATCG GACCGCCACC GGCGCGCCTC AGTTACTTGA ACGGAACCAC CATCGTCGAC GCCGCCATTC GCTCCGGCGC
ACAGGCTATT CACCCTGGGT ATGGATTCTT GTCCGAGAGT GCTGTCTTCG CTAAGCTTTG TGAGGACAGT GGTCTCACGT
TTATTGGGCC TCCTGCATCT GCAATTCGCG ACATGGGAGA CAAGAGTGCA TCGAAGAGAA TAATGGGAAC TGCAGGGGTG
CCTCTTGTGC CTGGATATCA CGGAGATGAT CAAGATATTG AGAGAATGAA GTTAGAAGCT GATAAGATTG GATACCCAGT
CCTAATTAAG CCAACCCATG GTGGTGGAGG AAAGGGTATG AGAATTGTGC ACTCTCCAGA GGAGTTTGTT GAATCATTCC
TAGCAGCACA ACGGGAAGCA GCAGCTTCTT TTGGTGTCAA CACCATATTG CTGGAGAAGT ATATTACACG GCCAAGACAT
ATAGAAGTCC AAATATTTGG GGATAAGCAT GGGAATGTTC TGCATTTGAA TGAGCGAGAT TGCAGTGTTC AGAGAAGACA
CCAAAAAATA ATAGAAGAAG CTCCAGCACC AAACATTTCT GCCGACTTTC GCGCACACTT AGGTCAAGCT GCTGTTTCTG
CAGCAAAGGC AGTTAATTAT TACAGTGCTG GGACTGTGGA GTTTATAGTT GATACAATCT CTGACGAGTT TTACTTCATG
GAGATGAATA CACGTCTTCA GGTTGAGCAT CCTGTCACAG AAATGATTGT TGGTCAGGAT CTTGTTGAAT GGCAAATTCT
TGTTGCCAAT GGAGAAGCTC TTCCATTGAG TCAATCACAG GTACCCATAT CAGGCCATGC TTTTGAAGCT CGAATCTATG
CTGAAAATGT TCAAAAAGGG TTTCTTCCAG CAACTGGAGT TCTACACCAT TATCATGTTC CAGTCTCATC TGAAGTTCGG
GTGGAGACTG GGGTTAAACA AGGAGACACT GTTAGCATGC ACTATGATCC TATGATTGCT AAGCTTGTGG TGTGGGGAGA
CAATCGTGCT TCTGCATTGG TCAAACTGAA GGATAGTTTG TCAAAGTTCC AGGTTGCAGG TTTACCAACC AATGTCAGCT
TCATTCTAAA GCTAGCTAAT CACGGGGCAT TTGCAAATGG CAATGTGGAG ACTCATTTTA TTGATAACTA CAAAGAAGAT
CTCTTTGGGG ATGGTAACAA TTCAGTGTCT GACCAAGAAG CATACGAAGC TGCTAGACAT AATGCATCTC TAGTGGCCGC
ATGTCTCATT GAGAAAGAGC ATTTCGTATC ATCAAGAAAC CCCCCTGGGG GCGGCAGCTT ACTCCCTATA TGGTATTCTT
CTCCGCCTTT TAGAGTTCAT CATCAGGCTA AGCGTAAAAT GGAACTTGAA TGGGAAAATG AATATGATAG CGGTAGCTCA
AAGACCATGA AGCTTACTAT CACCTGTCAG CCTGCTGGGA GATACCTGAT TGAAACAGAA GAAAATGGAT CTCCTGTTTT
AGACGTCAAA GCATCATATG TAAAAGATCG CCATTTTAGA GTTGAAGCTG GTGGTGTAAT CAATGATGTT AACGTAGCTG
TTTATTCAAA GGATCAAACA AGGCATATTC ATATTTGGCA AGGATCCTAT CATCATTATT TCAGAGAGAA GTTAGGCCTG
GATCTATCTG AGGATGGAGA ATTACAACAT AAACCCAAAG TTGAAACATC AGCCAATCCT CGAGGGACAG TTGTAGCACC
CATGGCAGGC TTGGTAGTTA AAGTTCTAGT GGAGAACAAG ACAAGAGTAG AGGAAGGTCA ACCTGTGATA GTATTAGAAG
CAATGAAGAT GGAGCATGTT GTAAAGGCAC CATCTTCTGG CTATGTGCAT GAACTTCAAG TTACGGTTGG TGAACAGGTT
TCAGATGGCA GTGTTCTTTT CAGTGTAAAG GATCAATAAA ATCTCACACG GATTACAGCT TTACCGTTAT GTCAAGATTC
TGGCAACAGG GCCTCTATCT GAATGGATAC TTGCACGCAG GAGGACAACC GAACGCCTTG AATTTGATTA CTTAGAAGTC
CTTGTAACTC AATTTTTCAA GTTACAAAGG ATGACATGTA CTTTACAATA ATGCAAACAG TTTCTCCAGT AACTATATAA
TAAGACTACA AATTGCTTCA TGTTTAGATA TTCTTCCATC AGAGTCTTTT TCCCTTCTAT GATGGCTCCC CTTCTGATGG
GAGACATGCA CATAAGCCCA AAATAATGCG ATAGTTGGAA ACCACCAACT AAAAATCTAA TATTGAGTTC AGTCTTTGGG
AAAAACAATG GCACTGATAC CAAAGTGAAG AGCCAAAATT TAAACTTTCA GGTCTTTAGT CTCATAATAG AGTCACGCAT
TGATTTTTAA CAATAGGTTT TGCCTCCATA ATTTCCTAGA CTTGCGG

>Vigan.08G233300.01
ATGGCTTCTC TGGCATTAAT CCGCAGAAAG ATTATAATCA CCCGCACCAC GCTCTCCCAC TGGCACGTGT GCGCACGAGC
ATTCTCCAAC GCTGACAGCA ACAACAATCG CATCGAGAAG ATTCTAGTAG CTAACCGCGG CGAAATAGCT TGCAGGATCA
TGCGCACCGC ACGGAGGCTT GGCATTCAAA CCGTCGCCGT GTATAGCGAC GCCGATAGGG ACTCGCTACA CGTGGCCTCC
GCCGACGAGG CCATCCGAAT CGGACCGCCA CCGGCGCGCC TCAGTTACTT GAACGGAACC ACCATCGTCG ACGCCGCCAT
TCGCTCCGGC GCACAGGCTA TTCACCCTGG GTATGGATTC TTGTCCGAGA GTGCTGTCTT CGCTAAGCTT TGTGAGGACA
GTGGTCTCAC GTTTATTGGG CCTCCTGCAT CTGCAATTCG CGACATGGGA GACAAGAGTG CATCGAAGAG AATAATGGGA
ACTGCAGGGG TGCCTCTTGT GCCTGGATAT CACGGAGATG ATCAAGATAT TGAGAGAATG AAGTTAGAAG CTGATAAGAT
TGGATACCCA GTCCTAATTA AGCCAACCCA TGGTGGTGGA GGAAAGGGTA TGAGAATTGT GCACTCTCCA GAGGAGTTTG
TTGAATCATT CCTAGCAGCA CAACGGGAAG CAGCAGCTTC TTTTGGTGTC AACACCATAT TGCTGGAGAA GTATATTACA
CGGCCAAGAC ATATAGAAGT CCAAATATTT GGGGATAAGC ATGGGAATGT TCTGCATTTG AATGAGCGAG ATTGCAGTGT
TCAGAGAAGA CACCAAAAAA TAATAGAAGA AGCTCCAGCA CCAAACATTT CTGCCGACTT TCGCGCACAC TTAGGTCAAG
CTGCTGTTTC TGCAGCAAAG GCAGTTAATT ATTACAGTGC TGGGACTGTG GAGTTTATAG TTGATACAAT CTCTGACGAG
TTTTACTTCA TGGAGATGAA TACACGTCTT CAGGTTGAGC ATCCTGTCAC AGAAATGATT GTTGGTCAGG ATCTTGTTGA
ATGGCAAATT CTTGTTGCCA ATGGAGAAGC TCTTCCATTG AGTCAATCAC AGGTACCCAT ATCAGGCCAT GCTTTTGAAG
CTCGAATCTA TGCTGAAAAT GTTCAAAAAG GGTTTCTTCC AGCAACTGGA GTTCTACACC ATTATCATGT TCCAGTCTCA
TCTGAAGTTC GGGTGGAGAC TGGGGTTAAA CAAGGAGACA CTGTTAGCAT GCACTATGAT CCTATGATTG CTAAGCTTGT
GGTGTGGGGA GACAATCGTG CTTCTGCATT GGTCAAACTG AAGGATAGTT TGTCAAAGTT CCAGGTTGCA GGTTTACCAA
CCAATGTCAG CTTCATTCTA AAGCTAGCTA ATCACGGGGC ATTTGCAAAT GGCAATGTGG AGACTCATTT TATTGATAAC
TACAAAGAAG ATCTCTTTGG GGATGGTAAC AATTCAGTGT CTGACCAAGA AGCATACGAA GCTGCTAGAC ATAATGCATC
TCTAGTGGCC GCATGTCTCA TTGAGAAAGA GCATTTCGTA TCATCAAGAA ACCCCCCTGG GGGCGGCAGC TTACTCCCTA
TATGGTATTC TTCTCCGCCT TTTAGAGTTC ATCATCAGGC TAAGCGTAAA ATGGAACTTG AATGGGAAAA TGAATATGAT
AGCGGTAGCT CAAAGACCAT GAAGCTTACT ATCACCTGTC AGCCTGCTGG GAGATACCTG ATTGAAACAG AAGAAAATGG
ATCTCCTGTT TTAGACGTCA AAGCATCATA TGTAAAAGAT CGCCATTTTA GAGTTGAAGC TGGTGGTGTA ATCAATGATG
TTAACGTAGC TGTTTATTCA AAGGATCAAA CAAGGCATAT TCATATTTGG CAAGGATCCT ATCATCATTA TTTCAGAGAG
AAGTTAGGCC TGGATCTATC TGAGGATGGA GAATTACAAC ATAAACCCAA AGTTGAAACA TCAGCCAATC CTCGAGGGAC
AGTTGTAGCA CCCATGGCAG GCTTGGTAGT TAAAGTTCTA GTGGAGAACA AGACAAGAGT AGAGGAAGGT CAACCTGTGA
TAGTATTAGA AGCAATGAAG ATGGAGCATG TTGTAAAGGC ACCATCTTCT GGCTATGTGC ATGAACTTCA AGTTACGGTT
GGTGAACAGG TTTCAGATGG CAGTGTTCTT TTCAGTGTAA AGGATCAATA A

>Vigan.08G233300.01
MASLALIRRK IIITRTTLSH WHVCARAFSN ADSNNNRIEK ILVANRGEIA CRIMRTARRL GIQTVAVYSD ADRDSLHVAS
ADEAIRIGPP PARLSYLNGT TIVDAAIRSG AQAIHPGYGF LSESAVFAKL CEDSGLTFIG PPASAIRDMG DKSASKRIMG
TAGVPLVPGY HGDDQDIERM KLEADKIGYP VLIKPTHGGG GKGMRIVHSP EEFVESFLAA QREAAASFGV NTILLEKYIT
RPRHIEVQIF GDKHGNVLHL NERDCSVQRR HQKIIEEAPA PNISADFRAH LGQAAVSAAK AVNYYSAGTV EFIVDTISDE
FYFMEMNTRL QVEHPVTEMI VGQDLVEWQI LVANGEALPL SQSQVPISGH AFEARIYAEN VQKGFLPATG VLHHYHVPVS
SEVRVETGVK QGDTVSMHYD PMIAKLVVWG DNRASALVKL KDSLSKFQVA GLPTNVSFIL KLANHGAFAN GNVETHFIDN
YKEDLFGDGN NSVSDQEAYE AARHNASLVA ACLIEKEHFV SSRNPPGGGS LLPIWYSSPP FRVHHQAKRK MELEWENEYD
SGSSKTMKLT ITCQPAGRYL IETEENGSPV LDVKASYVKD RHFRVEAGGV INDVNVAVYS KDQTRHIHIW QGSYHHYFRE
KLGLDLSEDG ELQHKPKVET SANPRGTVVA PMAGLVVKVL VENKTRVEEG QPVIVLEAMK MEHVVKAPSS GYVHELQVTV
GEQVSDGSVL FSVKDQ*