GBrowse Details

Vigan.08G233400.01

Basic Information:
Name: Vigan.08G233400.01
Multiple alignment
Variant Information
Position: Chr08:21899874..21902022 (- strand)
Length: 2149
Functional Information:
Description: Similar to nucleolar protein 58-like. [XP_004495182.1, Cicer arietinum]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:66.52,54.65,8.94,13.08,15.44,16.47,21.04,11.55
Arabidopsis thaliana homolog: AT4G04614.1
Automatic updates:
Name: NM_001248889 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306236 (LOC100306236), transcript variant 2, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:21899874..21900019 (- strand)
Length: 146
Type: three_prime_UTR
Position: Chr08:21900020..21900408 (- strand)
Length: 389
Type: CDS
Position: Chr08:21901682..21901778 (- strand)
Length: 97
Type: CDS
Position: Chr08:21901779..21902022 (- strand)
Length: 244
Type: five_prime_UTR


>Vigan.08G233400.01
GTTTCTGAAA AAATTTCATC GGTCTGCGTC TTTGAGGGCA ACCTAAGCTC AGCTCCTAAT AATTCATCAC TTTTTCGTTA
TCATTTTAAA TTTCAAATTT TTATTCTTAG ATTGAACGTG TTGTTGTTTC TGTCGAGCGG TATTTGAGCA TTGCATCTTT
CACTTTTTAT TTGCAGAGAA GCATCATCGG GGGTTGAACC CTTGTTTGTA TTCGTGGTGA TTGTGCCGTG GCGTTATCCG
TACTATGAAG AGGACTATGC CATGGAGTGA CGATGACGAG TCATCATCTT CACATTCAGA CTCTGAACAT GATAGTGAAG
CTGGAGCGGA AAACTCCAAA GGGAAATCTA GGAAGCAGAA AAGCGGTGTA ATTGACTTTG AGGCTCTGAG GAGACATGGG
TATAGAGGTG GACCTTCGGT CCTAAAAGTA CCGGCACCCA GAGAAGGGGA TGAGTCGAAG CAAGATTGGT CGTGGTCCAG
TGGAAAAGAA AAGCGTGCAG AGAAGGAAAT TGAAGAATCA TATGAAGAGC GACAAAAAAC AAGGGAGGCT ATTTCCCAAG
GAGAGCAGCT GCCAGCTGTC CTGACTAGGA ATGACAAGAA GAATCTTTCT TTCTCTCAGA AGGAAAAGAG GAAGAGAGAG
CTGGGTCAAG CTAGCAGAGG CAAAAATTAT GTTGAAGAAG AGAAGAGGCT GTTGAGAGAG AATGGTATCT ATTCTGGTTT
TGATGCTTGA TTTTCCACAC CCTTCATATT CTTGTACAAA CACACTCTCA TTTTCTTCTA CTCTACTGAG TTTCAACTTG
TAGTCACTGC TTTAAAACTT GACACAAATT ATTATGATGT GAAAAAAAAA TATTAAAAAA ACTCGTATTG GAGGAA

>Vigan.08G233400.01
ATGAAGAGGA CTATGCCATG GAGTGACGAT GACGAGTCAT CATCTTCACA TTCAGACTCT GAACATGATA GTGAAGCTGG
AGCGGAAAAC TCCAAAGGGA AATCTAGGAA GCAGAAAAGC GGTGTAATTG ACTTTGAGGC TCTGAGGAGA CATGGGTATA
GAGGTGGACC TTCGGTCCTA AAAGTACCGG CACCCAGAGA AGGGGATGAG TCGAAGCAAG ATTGGTCGTG GTCCAGTGGA
AAAGAAAAGC GTGCAGAGAA GGAAATTGAA GAATCATATG AAGAGCGACA AAAAACAAGG GAGGCTATTT CCCAAGGAGA
GCAGCTGCCA GCTGTCCTGA CTAGGAATGA CAAGAAGAAT CTTTCTTTCT CTCAGAAGGA AAAGAGGAAG AGAGAGCTGG
GTCAAGCTAG CAGAGGCAAA AATTATGTTG AAGAAGAGAA GAGGCTGTTG AGAGAGAATG GTATCTATTC TGGTTTTGAT
GCTTGA

>Vigan.08G233400.01
MKRTMPWSDD DESSSSHSDS EHDSEAGAEN SKGKSRKQKS GVIDFEALRR HGYRGGPSVL KVPAPREGDE SKQDWSWSSG
KEKRAEKEIE ESYEERQKTR EAISQGEQLP AVLTRNDKKN LSFSQKEKRK RELGQASRGK NYVEEEKRLL RENGIYSGFD
A*