VIGGS:GBrowse

Vigan.08G233700.01

Basic Information:

Name:	Vigan.08G233700.01 Multiple alignment Variant Information
Position:	Chr08:21979756..21980918 (+ strand)
Length:	1163

Functional Information:

Description:	Similar to non-specific lipid-transfer protein-like protein At2g13820-like isoform X2. [XP_004495186.1, Cicer arietinum]
GO:	Biological Process: lipid transport (GO:0006869)
GO:	Molecular Function: lipid binding (GO:0008289)
InterPro:	Plant lipid transfer protein/Par allergen (IPR000528)
InterPro:	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain (IPR016140)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,1.34,0.79,11.13,2.44,5.91,0.11
Arabidopsis thaliana homolog:	AT2G48130.1

Automatic updates:

Name:	NM_001251439 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306151 (LOC100306151), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:21979756..21979847 (+ strand)
Length:	92
Type:	five_prime_UTR

Position:	Chr08:21979848..21980166 (+ strand)
Length:	319
Type:	CDS

Position:	Chr08:21980276..21980386 (+ strand)
Length:	111
Type:	CDS

Position:	Chr08:21980532..21980662 (+ strand)
Length:	131
Type:	CDS

Position:	Chr08:21980663..21980918 (+ strand)
Length:	256
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G233700.01
CACAAATCCC TCTGTATCAA TATCAGAACA CAGCACAAGG TATCCACATT GAGAGTTTGA GATTTCTGAT CTGTGAGAAG
TTTCTGAATA TAATGGGTTT TAGAGGGTTT ATGTTGTGTC TAGTTACGGT TATGGTGGGA ACCATATGGA CTAAAAATGC
TACTGCTCAA TCAGGTTGCA CCAGTACACT GACTAGCTTG AGCCCTTGCC TGAACTACGT AATGGGAAGT TCTTCAACCC
CATCAGGTCC ATGTTGCTCA CAGCTCTCAA GCATTGTCCA ATCTTCACCA CAGTGCCTTT GCTCCGTCCT CAATGGTGGT
TCCACTTTCG GAATTACCAT TAATCAGACT CTTGCTTTGT CTCTCCCTGG CGCTTGTAAA GTTCAAACAC CCCCAGTTAG
CCAGTGTCAA GCTGGGAATG GACCAACACC TCCTTCCACT GCTCCACTTG CTTCTCCTTC TGATTCCTCA GCTGAATCAC
CTCAAGAGTC GATATCACCT TCTTCTTCAG ACTTTCCCTC AGGTGCGGGA TCTAAAACGG TTCCATCAAT AGATGGTGGT
TCATCTGATG GAAACGCTAT TGAAGTCCGC TCTCACTTGG TGTTCTATCT TATTGCCATT GTGTCTTGTG TCTTAACCTT
CATCAAGTTC TGATTATTTT TGTGCCAACT GAGATTTTGG GTGCTGAAAT TTTATGTTTA GCGTTCGTTT ACGCACAAGA
TATTTGCACG TCCTTGTATA AATAAAAATA TTAAATAGAA GAAGTAAATT TATATGAAGT TCATTTTTTT AGAGGGATTT
GATGTAGAAG TTACTTGTTT CTGCTGATCC ACTGCTATTT CTTCTTGGTG TAGATTGGTT ATCTACTTTC TTGTTAACGG
TTTCTTCCCC ATGCAACTAA ATAAAGGAC

[show][hide][copy]CDS

>Vigan.08G233700.01
ATGGGTTTTA GAGGGTTTAT GTTGTGTCTA GTTACGGTTA TGGTGGGAAC CATATGGACT AAAAATGCTA CTGCTCAATC
AGGTTGCACC AGTACACTGA CTAGCTTGAG CCCTTGCCTG AACTACGTAA TGGGAAGTTC TTCAACCCCA TCAGGTCCAT
GTTGCTCACA GCTCTCAAGC ATTGTCCAAT CTTCACCACA GTGCCTTTGC TCCGTCCTCA ATGGTGGTTC CACTTTCGGA
ATTACCATTA ATCAGACTCT TGCTTTGTCT CTCCCTGGCG CTTGTAAAGT TCAAACACCC CCAGTTAGCC AGTGTCAAGC
TGGGAATGGA CCAACACCTC CTTCCACTGC TCCACTTGCT TCTCCTTCTG ATTCCTCAGC TGAATCACCT CAAGAGTCGA
TATCACCTTC TTCTTCAGAC TTTCCCTCAG GTGCGGGATC TAAAACGGTT CCATCAATAG ATGGTGGTTC ATCTGATGGA
AACGCTATTG AAGTCCGCTC TCACTTGGTG TTCTATCTTA TTGCCATTGT GTCTTGTGTC TTAACCTTCA TCAAGTTCTG
A

[show][hide][copy]PROTEIN

>Vigan.08G233700.01
MGFRGFMLCL VTVMVGTIWT KNATAQSGCT STLTSLSPCL NYVMGSSSTP SGPCCSQLSS IVQSSPQCLC SVLNGGSTFG
ITINQTLALS LPGACKVQTP PVSQCQAGNG PTPPSTAPLA SPSDSSAESP QESISPSSSD FPSGAGSKTV PSIDGGSSDG
NAIEVRSHLV FYLIAIVSCV LTFIKF*