GBrowse Details

Vigan.08G240200.01

Basic Information:
Name: Vigan.08G240200.01
Multiple alignment
Variant Information
Position: Chr08:22972688..22974681 (- strand)
Length: 1994
Functional Information:
Description: Similar to methyl-CpG-binding domain-containing protein 4-like isoform X1. [XP_003536387.1, Glycine max]
GO: Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Methyl-CpG DNA binding (IPR001739)
Zinc finger, CW-type (IPR011124)
DNA-binding domain (IPR016177)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.03,3.31,9.57,17.08,15.96,18.23,14.24,12.19
Arabidopsis thaliana homolog: AT3G63030.1
Automatic updates:
Name: NM_001252946 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max methyl-CpG-binding domain-containing protein 4-like (LOC100802350), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:22972688..22972909 (- strand)
Length: 222
Type: three_prime_UTR
Position: Chr08:22972910..22973401 (- strand)
Length: 492
Type: CDS
Position: Chr08:22974574..22974627 (- strand)
Length: 54
Type: CDS
Position: Chr08:22974628..22974681 (- strand)
Length: 54
Type: five_prime_UTR


>Vigan.08G240200.01
GGAGATGAAA ATTGTATGTG GCACATAGAG TTGAAAGGGA AACAACTTAT GTGAATGAAA GAAATGAAGG GAAGTCAAGA
AATCTCAAAA ACACCATCCT CTTCCAAGAG AACATTGTCA AGTCAGGGTT CAGTGGATAT ATACGCGGCG CAATGCAAAA
ACTGCTTAAA ATGGAGAGTG ATTGATACAC AGGAAGAGTT TGAAGAGGTT AGAAGTAAAG CCACTGAGGA ACCTTTCGTT
TGCAGCAGAA AGGCTAATTG TTCCTGTGAG GAACCTGCTG ATATTGAATA TGATTCCACT CGAACGTGGG TCATTGACAA
GCCTAACCTC CCAAAAACTC CACAAGGTTT TAGGAGGAGC TTGGTACTTA GAAAAGATTA CTCCAAATTG GACGCTTACT
ACGTCACACC TTCTGGCAAA AAACTGAGAA CCCGCAATGA GATAGGAGCG TTTCTAAAAG ATAATCCAGA ATTCAAAGGT
GTTAGTGTTA CAGATTTTGA TTTTTCTTCC CCAAAGATAA TGCAGGACAC CATACCAGAG ATAATTGAGC AGAAGGATTC
TGCTAACAAG AAAGCTAAGA TAGCCAAAGG TGATGTTTGA GGAATACCAT CTCAAGTTTG CATGATGCAA AGATGTTGAT
TCTGGTTTGT TTGTTGGATA TTACTTTAGA GATTGTTGTA AAATCAAACC TGACAGCGTA TTAAACGAAT TTTGTTCATG
CCCTTGTATT ATATTCTAAT TTTAATTTTA ATGTTAATGT TGTTATCAGG CTTAAAATTA ACCCAAATTT ACTGCAACAT
TTACGGTTTA CAAACATCAA AT

>Vigan.08G240200.01
ATGAAAGAAA TGAAGGGAAG TCAAGAAATC TCAAAAACAC CATCCTCTTC CAAGAGAACA TTGTCAAGTC AGGGTTCAGT
GGATATATAC GCGGCGCAAT GCAAAAACTG CTTAAAATGG AGAGTGATTG ATACACAGGA AGAGTTTGAA GAGGTTAGAA
GTAAAGCCAC TGAGGAACCT TTCGTTTGCA GCAGAAAGGC TAATTGTTCC TGTGAGGAAC CTGCTGATAT TGAATATGAT
TCCACTCGAA CGTGGGTCAT TGACAAGCCT AACCTCCCAA AAACTCCACA AGGTTTTAGG AGGAGCTTGG TACTTAGAAA
AGATTACTCC AAATTGGACG CTTACTACGT CACACCTTCT GGCAAAAAAC TGAGAACCCG CAATGAGATA GGAGCGTTTC
TAAAAGATAA TCCAGAATTC AAAGGTGTTA GTGTTACAGA TTTTGATTTT TCTTCCCCAA AGATAATGCA GGACACCATA
CCAGAGATAA TTGAGCAGAA GGATTCTGCT AACAAGAAAG CTAAGATAGC CAAAGGTGAT GTTTGA

>Vigan.08G240200.01
MKEMKGSQEI SKTPSSSKRT LSSQGSVDIY AAQCKNCLKW RVIDTQEEFE EVRSKATEEP FVCSRKANCS CEEPADIEYD
STRTWVIDKP NLPKTPQGFR RSLVLRKDYS KLDAYYVTPS GKKLRTRNEI GAFLKDNPEF KGVSVTDFDF SSPKIMQDTI
PEIIEQKDSA NKKAKIAKGD V*