GBrowse Details

Vigan.08G243100.01

Basic Information:
Name: Vigan.08G243100.01
Multiple alignment
Variant Information
Position: Chr08:23372072..23375833 (+ strand)
Length: 3762
Functional Information:
Description: Similar to tubby-like F-box protein 3-like. [XP_004495994.1, Cicer arietinum]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tubby, C-terminal (IPR000007)
F-box domain (IPR001810)
Tubby, C-terminal, conserved site (IPR018066)
Tubby C-terminal-like domain (IPR025659)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.31,18.39,8.93,13.47,9.74,9.00,11.99,10.54
Arabidopsis thaliana homolog: AT2G47900.3
Automatic updates:
Name: NM_001255104 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tubby-like F-box protein 3-like (LOC100809257), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:23372072..23372508 (+ strand)
Length: 437
Type: five_prime_UTR
Position: Chr08:23372509..23372841 (+ strand)
Length: 333
Type: CDS
Position: Chr08:23373897..23373984 (+ strand)
Length: 88
Type: CDS
Position: Chr08:23374184..23374313 (+ strand)
Length: 130
Type: CDS
Position: Chr08:23374543..23374722 (+ strand)
Length: 180
Type: CDS
Position: Chr08:23374884..23375355 (+ strand)
Length: 472
Type: CDS
Position: Chr08:23375356..23375833 (+ strand)
Length: 478
Type: three_prime_UTR


>Vigan.08G243100.01
CGACCCGGTA TTGGATAAAG GCCATTTGGT CTCAACCCAC ATTCCTCACA CTACCTTTTT GCGCTTCTTA CTTTGCTTTC
TTCCTTTCTA TTTTCAACAC AATCATCGCA AGGGTTTCCC TTCCACCTCA CATGCTTCCG AGGGGAGGGG ATTCACGCTC
TTTTTCTCCC AATTCCGCCT TTCTTAGTCA ACTATTCACT TATTCATGTT GCTTATCCCT TGTGTTCATT TCTGTCAAAA
TTCACCGTAA CTGAAGCTAA AATGTCTATG TGTCTCCCGT AGTGCTTCGT TTCTTCGACA AAAGGAGATT TTTTTTTTTT
CCAGAAAAAT TTCTCACATT TCCATGTTTT GGGGTGTTTT GTTAATCTTG TGAGGGGTTT AGAGGAGTTG GGGAAGTGGG
AATGATCTGC AAGAGGTGTT AAGAAAAGGG GTTGACGATG TCGTTTAGGA GTATCATTGC GGAGAGGAAG GGATTTGAGT
TTAAGTTTGG GTATAGTATG AGATCCAGGT CACAGTCACA CAGTGATGCC ATTGTCCAGG ATCGTTTGGT GGTGCTTGAT
GGGTTGAAGC AGAGTTGTTG GGCTAACATG CCCCCTGAGC TTTTGAGGGA TGTCCTCATG AGGATTGAGG CTTCTGAGGA
TTCCTGGCCT GCCCGAAAAC ACGTCGTCGC CTGTGCCGGA GTGTGCCGCA GTTGGAGAGA AATCATGAAG GAAATTGTCA
AATCCCCTCA AGTATCTGGC AACTTGACAT TTCCAATCTC CTTGAAGCAG CCTGGTCCTA GGGGCTCTCT TCTTCAGTGC
TATATTAAAC GAAATCACAG TAATAAAACA TATTATCTGT TTCTTGGTTT AAACCAAGCC TCAACTGAGG ATGGCAAGTT
CCTTCTTTCT GCACGCAAGT GTCGACGTGC AACTCACACT GACTATATCA TTTCTCTTAA CTGTGATGAT GTCTCAAGAG
GGAGTAATAC CTATATTGGG AAGCTGAGGT CAAACTTTTT GGGCACCAAA TTCACTGTGT ATGATGCACA CCCTCCAATT
TATGGAGCCA AAGTTACAAA GTCTCGTTCC TCCAGGCTAG TCAGTCTCAA GCAAGTTTCT CCCAGAGTTC CTGCTGGCAA
CTACCCCATT GCTCATGTCT CGTATGATCT GAATGTTTTG GGCTCTAGAG GCCCTAGAAT AATGCACTGT GTTATGGATG
CCATCCCTGC CTCAGCTGTT GAACCTGGAG GTGTGGCCCC AACACAGACT CAATTTCTTC ATAGCAGAAT TGATACTTCT
CCATCCATCC CTTTCTTCAG ATCAAAATCA ACCCGCATGG ATACTCTCAC GTCAGAACCT TTGACTTGTC AAGAGGAGGG
GATGCTGGTA CTGCAAAACA AGTCCCCCAG GTGGCATGAA CAACTTCAAT TCTGGTGTCT TAACTTCAAC GGACGTGTGA
CAGTTGCTTC AGTTAAAAAT TTCCAGCTGG TTGCTTCTCC AAAAAATGGA GTTTCTGAGC AGGCTCAGGA AAATGTTATT
CTACAGTTTG GAAAAGTTGG TAAGGATGTA TTCACCATGG ATTATCAGTA TCCAATCTCG GCCTTTGAAG CATTTGCAAT
ATGCCTTAGC AGCTTTGACA CCAAGATTGC TTGTGAATGA TTGCTGCCAT AGACAGGTAG GTATTCTAAT TCTAATAAAA
AATGCCATCA ATCAGAAACT TTATTTAATG CTTTGAGATG TTGGTCGTTT ATACACAAAA TATCAAAGTG CAAGTAGGAA
CACAATGTTA TTGGAGCCAC CTTACAATTT GCAAAATAAT ATTTGGTTCA CATTTAGACC TTTGTGTAAT GGAAATGCTC
ACTAAGTTGT TACTTTTTAC TTGCCAGATA TTTTGCCAAT CCTGGTGCTG GTTGGAGTTG CACAAACAGT AATGTGGGTA
ATACCTGCAA AAGATTTTCT ACTCTTGTAT TTAGTACTGC TAAGTTTCAG AATCACCTTT CCTTTGTCTA TTGTATATGG
CTGTTTGTTT GCATTATATT TAACCAATGT TGACTTGTAT TTTGTGTTGT TTGTGTAGAC TAAATTCTTT CTTTTTCCGT
GAGTTTGTAG ATGACCTTAG TTGTCATTGG TTTGTGAG

>Vigan.08G243100.01
ATGTCGTTTA GGAGTATCAT TGCGGAGAGG AAGGGATTTG AGTTTAAGTT TGGGTATAGT ATGAGATCCA GGTCACAGTC
ACACAGTGAT GCCATTGTCC AGGATCGTTT GGTGGTGCTT GATGGGTTGA AGCAGAGTTG TTGGGCTAAC ATGCCCCCTG
AGCTTTTGAG GGATGTCCTC ATGAGGATTG AGGCTTCTGA GGATTCCTGG CCTGCCCGAA AACACGTCGT CGCCTGTGCC
GGAGTGTGCC GCAGTTGGAG AGAAATCATG AAGGAAATTG TCAAATCCCC TCAAGTATCT GGCAACTTGA CATTTCCAAT
CTCCTTGAAG CAGCCTGGTC CTAGGGGCTC TCTTCTTCAG TGCTATATTA AACGAAATCA CAGTAATAAA ACATATTATC
TGTTTCTTGG TTTAAACCAA GCCTCAACTG AGGATGGCAA GTTCCTTCTT TCTGCACGCA AGTGTCGACG TGCAACTCAC
ACTGACTATA TCATTTCTCT TAACTGTGAT GATGTCTCAA GAGGGAGTAA TACCTATATT GGGAAGCTGA GGTCAAACTT
TTTGGGCACC AAATTCACTG TGTATGATGC ACACCCTCCA ATTTATGGAG CCAAAGTTAC AAAGTCTCGT TCCTCCAGGC
TAGTCAGTCT CAAGCAAGTT TCTCCCAGAG TTCCTGCTGG CAACTACCCC ATTGCTCATG TCTCGTATGA TCTGAATGTT
TTGGGCTCTA GAGGCCCTAG AATAATGCAC TGTGTTATGG ATGCCATCCC TGCCTCAGCT GTTGAACCTG GAGGTGTGGC
CCCAACACAG ACTCAATTTC TTCATAGCAG AATTGATACT TCTCCATCCA TCCCTTTCTT CAGATCAAAA TCAACCCGCA
TGGATACTCT CACGTCAGAA CCTTTGACTT GTCAAGAGGA GGGGATGCTG GTACTGCAAA ACAAGTCCCC CAGGTGGCAT
GAACAACTTC AATTCTGGTG TCTTAACTTC AACGGACGTG TGACAGTTGC TTCAGTTAAA AATTTCCAGC TGGTTGCTTC
TCCAAAAAAT GGAGTTTCTG AGCAGGCTCA GGAAAATGTT ATTCTACAGT TTGGAAAAGT TGGTAAGGAT GTATTCACCA
TGGATTATCA GTATCCAATC TCGGCCTTTG AAGCATTTGC AATATGCCTT AGCAGCTTTG ACACCAAGAT TGCTTGTGAA
TGA

>Vigan.08G243100.01
MSFRSIIAER KGFEFKFGYS MRSRSQSHSD AIVQDRLVVL DGLKQSCWAN MPPELLRDVL MRIEASEDSW PARKHVVACA
GVCRSWREIM KEIVKSPQVS GNLTFPISLK QPGPRGSLLQ CYIKRNHSNK TYYLFLGLNQ ASTEDGKFLL SARKCRRATH
TDYIISLNCD DVSRGSNTYI GKLRSNFLGT KFTVYDAHPP IYGAKVTKSR SSRLVSLKQV SPRVPAGNYP IAHVSYDLNV
LGSRGPRIMH CVMDAIPASA VEPGGVAPTQ TQFLHSRIDT SPSIPFFRSK STRMDTLTSE PLTCQEEGML VLQNKSPRWH
EQLQFWCLNF NGRVTVASVK NFQLVASPKN GVSEQAQENV ILQFGKVGKD VFTMDYQYPI SAFEAFAICL SSFDTKIACE
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