GBrowse Details

Vigan.08G245600.01

Basic Information:
Name: Vigan.08G245600.01
Multiple alignment
Variant Information
Position: Chr08:23914235..23915709 (+ strand)
Length: 1475
Functional Information:
Description: Similar to Uncharacterized protein. [I1L7W8, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Glutathione S-transferase, N-terminal (IPR004045)
Glutathione S-transferase, C-terminal (IPR004046)
Glutathione S-transferase, C-terminal-like (IPR010987)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.78,2.35,0.00,0.03,5.16,7.37,0.74
Arabidopsis thaliana homolog: AT3G62760.1
Automatic updates:
Name: KM818396 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phi class glutathione S-transferase (GSTF1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: KM818401 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phi class glutathione S-transferase (GSTF7) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001255110 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutathione S-transferase F1 (GSTF1), mRNA.
PubMed ID: 30555496 NCBI(pubmed)
Status: Known Variant
Name: NM_001304517 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutathione S-transferase GST 21 (GSTF7), mRNA.
PubMed ID: 11080288 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:23914235..23914311 (+ strand)
Length: 77
Type: five_prime_UTR
Position: Chr08:23914312..23914458 (+ strand)
Length: 147
Type: CDS
Position: Chr08:23914534..23914582 (+ strand)
Length: 49
Type: CDS
Position: Chr08:23915006..23915469 (+ strand)
Length: 464
Type: CDS
Position: Chr08:23915470..23915709 (+ strand)
Length: 240
Type: three_prime_UTR


>Vigan.08G245600.01
TATAAATGGA CCTTGCTTTC TTATCATACA TGTCTCTCTC TCCCTCTCGC TTTCCACACC TGTAGCAACC AAAAACAATG
GCGCTCAAGC TTTATGGTCT TCCTATGTCC ACAAACACCA CCCGTGCCAT CATCTGTCTC CATGAGAAAG AGGTCGATTT
TGAACTTGTT CCGGTCAATG TTTTCACTGC AGAGCATAAA CAGCCTCCTT TTCTCTCCAA GAACCCCTTT GGTTTGATTC
CAGTACTCGA AGACGGTGAA CTCATTCTTT TTGAGTCCAG GGCCATTACT GCATACGTAG CTGAAAAGTT CAAGGAAACA
GGACCTGATC TGATAAGGCA CAAGGACGTA AAAGAAGGTG CACTGGTGAA GGTGTGGACG GAGGTAGAGG CTCACTACTA
CGAGCCAGCA GTGTCACCTA TTATCTACGA GCACTTCGTG GCCCCTTTCC AAGGCAAAGA ACCAGACAAG TCAGTGATTG
ACACCAACGT TGAGAAGCTT AAGAAGGTGC TGGATGTGTA CGAGGAAAAG CTGAGCAGCA CTAAGTACCT TGCTGGGGAC
TTTTATAGCC TTGCTGATCT TAGCCATGTC TCTGAAACTC ACTACTTAAT GCAGACCCCT TGTGCTTCCA TGATCAATGA
GCGTCCCCAT GTAAAAGCTT GGTGGGAAGA TATCTCTTCT AGGCCTGCTT TCAGTAAGGT TGAGCCAGGA ATGACTTTTG
GTAAGAATCA AGAATGAGTG TTTCCATGTT CTGTGAGGTT CTTAAGGCTT AGTGTGTTGT ACTATGTTGT CTAGTGTAGC
AACTATGATC CAAGTCTTGC TTATTTTCAT TTCAAGTAAC TAGAGTTTGG AAAACCAACC AGCTTTTAGA GTGTCTTTAG
GAAGGACAAT TTGAGTTCCG TTATCTTCAT TTGATTAATT TAGAAAACTA ATTGAGTTGT AGTGTTTGAA CGTAAGTTAA
ATCCTTTACA TCATTAA

>Vigan.08G245600.01
ATGGCGCTCA AGCTTTATGG TCTTCCTATG TCCACAAACA CCACCCGTGC CATCATCTGT CTCCATGAGA AAGAGGTCGA
TTTTGAACTT GTTCCGGTCA ATGTTTTCAC TGCAGAGCAT AAACAGCCTC CTTTTCTCTC CAAGAACCCC TTTGGTTTGA
TTCCAGTACT CGAAGACGGT GAACTCATTC TTTTTGAGTC CAGGGCCATT ACTGCATACG TAGCTGAAAA GTTCAAGGAA
ACAGGACCTG ATCTGATAAG GCACAAGGAC GTAAAAGAAG GTGCACTGGT GAAGGTGTGG ACGGAGGTAG AGGCTCACTA
CTACGAGCCA GCAGTGTCAC CTATTATCTA CGAGCACTTC GTGGCCCCTT TCCAAGGCAA AGAACCAGAC AAGTCAGTGA
TTGACACCAA CGTTGAGAAG CTTAAGAAGG TGCTGGATGT GTACGAGGAA AAGCTGAGCA GCACTAAGTA CCTTGCTGGG
GACTTTTATA GCCTTGCTGA TCTTAGCCAT GTCTCTGAAA CTCACTACTT AATGCAGACC CCTTGTGCTT CCATGATCAA
TGAGCGTCCC CATGTAAAAG CTTGGTGGGA AGATATCTCT TCTAGGCCTG CTTTCAGTAA GGTTGAGCCA GGAATGACTT
TTGGTAAGAA TCAAGAATGA 

>Vigan.08G245600.01
MALKLYGLPM STNTTRAIIC LHEKEVDFEL VPVNVFTAEH KQPPFLSKNP FGLIPVLEDG ELILFESRAI TAYVAEKFKE
TGPDLIRHKD VKEGALVKVW TEVEAHYYEP AVSPIIYEHF VAPFQGKEPD KSVIDTNVEK LKKVLDVYEE KLSSTKYLAG
DFYSLADLSH VSETHYLMQT PCASMINERP HVKAWWEDIS SRPAFSKVEP GMTFGKNQE*