GBrowse Details

Vigan.08G248600.01

Basic Information:
Name: Vigan.08G248600.01
Multiple alignment
Variant Information
Position: Chr08:24447763..24449368 (- strand)
Length: 1606
Functional Information:
Description: Similar to Universal stress protein. [B4UW73, Arachis hypogaea]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Universal stress protein A (IPR006015)
UspA (IPR006016)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:86.47,16.13,200.14,44.72,1546.36,287.07,244.28,66.30
Arabidopsis thaliana homolog: AT2G47710.1
Automatic updates:
Name: NM_001251789 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527357 (LOC100527357), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:24447763..24448215 (- strand)
Length: 453
Type: three_prime_UTR
Position: Chr08:24448216..24448303 (- strand)
Length: 88
Type: CDS
Position: Chr08:24448644..24448765 (- strand)
Length: 122
Type: CDS
Position: Chr08:24448857..24448951 (- strand)
Length: 95
Type: CDS
Position: Chr08:24449031..24449202 (- strand)
Length: 172
Type: CDS
Position: Chr08:24449203..24449368 (- strand)
Length: 166
Type: five_prime_UTR


>Vigan.08G248600.01
CCTGTTTTAT CCTACAGTAT CCGCAAGGGA CGAGCACGTC GTTTTCAGAC AAGGGTTTCA CGAGTAAGCA ACGATTGAAT
AATTGACAAG TGGGTTTGGA TGTGTTTATA AATAATTGGA GTTGTCAAGG GAAGTGGGTA TAATTGTTGT GGTTTTGGTT
TTTGAGATGG CAGGATCGTC AGAGAAGCAA GTGGTGGTGA TCGGAATAGA TGACAGTGAA CAGAGCACGT ACGCTCTCAA
ATGGACCCTT GATCACTTCT TTCCGAGTCC AATCTTCAAG CTGGTTCTCG TTCACTCCAG ACCCACCGCC ACTTCCGCCG
TGGGTCTCGC CGGACCTGGT GCCGCTGAGA TATTGCCTAT TGTAGATTCT GATTTGAGAA AGATTGCGGC CAGAGTCGTT
GATTCCGCTA GACAACTTTG CATCGACAAA TCTGTAGATG ATGTCACAGC GGAGGTTGTG GAAGGCGATC CCAGAAATGT
TCTTTGTGAT GCTGTGGAAA AGTATCATGC AGCAGTATTG GTTGTGGGTA GTCACGGTTA TGGAGCTATA AAAAGGGCTG
TTTTAGGGAG TGTAAGTGAT TATTGTGCTC ATCATGCTCA CTGCACGGTA ATGATAGTGA AGAAGCCAAA AATCAAACAT
TGATCTGCAT TGTCTGTGTT CGTGATACAA CAATAAACAT AGTCCTTACA TTAATACTCG TCAAATTCGG AGCTATGCTT
CTTCGACTAT GTCATACTTG TTCTTATGAT GTAATAGACT TTACTTCTAA AGATTGAAAT CATAAAATAC TTCCGCTTTG
TTTTGTACAC AATAAGTTAT TGAAGTAAAT ATGTTTGATT AGTTCTTTCC TGCGCAACTA GCTTGAACAG TTTCTATGAG
CAATTTCGTT TTGTTTACTT TTTGATCAGT GGAAGGATCC CGATCGGAGA TGTGAGGATT TTGGGACAGT AGATGTACTT
GTGAATTGTG ATATATGCAA ATGGAGATAG CAAAACTGGT TCAATTTATT GGGTTGGTTC CTTTAATATG TTAAAAGTAA
GGCTTTTTTA TTTTTTATTT CCTACTGAAA GCGTTTGGTT TGTTCATGCA CGGGAG

>Vigan.08G248600.01
ATGGCAGGAT CGTCAGAGAA GCAAGTGGTG GTGATCGGAA TAGATGACAG TGAACAGAGC ACGTACGCTC TCAAATGGAC
CCTTGATCAC TTCTTTCCGA GTCCAATCTT CAAGCTGGTT CTCGTTCACT CCAGACCCAC CGCCACTTCC GCCGTGGGTC
TCGCCGGACC TGGTGCCGCT GAGATATTGC CTATTGTAGA TTCTGATTTG AGAAAGATTG CGGCCAGAGT CGTTGATTCC
GCTAGACAAC TTTGCATCGA CAAATCTGTA GATGATGTCA CAGCGGAGGT TGTGGAAGGC GATCCCAGAA ATGTTCTTTG
TGATGCTGTG GAAAAGTATC ATGCAGCAGT ATTGGTTGTG GGTAGTCACG GTTATGGAGC TATAAAAAGG GCTGTTTTAG
GGAGTGTAAG TGATTATTGT GCTCATCATG CTCACTGCAC GGTAATGATA GTGAAGAAGC CAAAAATCAA ACATTGA

>Vigan.08G248600.01
MAGSSEKQVV VIGIDDSEQS TYALKWTLDH FFPSPIFKLV LVHSRPTATS AVGLAGPGAA EILPIVDSDL RKIAARVVDS
ARQLCIDKSV DDVTAEVVEG DPRNVLCDAV EKYHAAVLVV GSHGYGAIKR AVLGSVSDYC AHHAHCTVMI VKKPKIKH*